View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9209_low_5 (Length: 704)
Name: NF9209_low_5
Description: NF9209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9209_low_5 |
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| [»] scaffold0504 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 291 - 692
Target Start/End: Original strand, 54632233 - 54632634
Alignment:
| Q |
291 |
tctatcatgtctaacttaaatattccttctttgtttatattctaattctaatgttatgtttatcacgtgcaataatggcattagagtaaatcatccttaa |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54632233 |
tctatcatgtctaacttaaatattccttctttgtttatattctaattctaatgttatgtttatcacgtgcaataatggcattagagtaaatcatccttaa |
54632332 |
T |
|
| Q |
391 |
agcacttaaatatttcttttgttttcaaacttttctgctgcttaccgacccactgatgaatataaaataaagacatggctaacaatcaggtaagccaaag |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54632333 |
agcacttaaatatttcttttgttttcaaacttttctgctgcttaccgacccactgatgaatataaaataaagacatggctaacaatcaggtaagccaaag |
54632432 |
T |
|
| Q |
491 |
caatatgagatagttttggtcaatgccatgcgtactcgtattaacaatcagggaagtttcataacttgaaggaaagaataccaggctgtggaatgtacaa |
590 |
Q |
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| T |
54632433 |
caatatgagatagttttggtcaatgccatgcgtactcgtattaacaatcagggaagtttcataacttgaaggaaagaataccaggctgtggaatgtacaa |
54632532 |
T |
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| Q |
591 |
atttcaatacgtgcatgtctgtgagtttttgtatgtttcaaatctttatatttatttgaaaatcagtgactttgggcaattctaattctgaattctgatg |
690 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54632533 |
atttcaatacgtgcatgtctgtgagtttttgtatgtttcaaatctttatatttatttgaaaatcagtgactttgggcaattctaattctgaattctgatg |
54632632 |
T |
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| Q |
691 |
tc |
692 |
Q |
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|| |
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| T |
54632633 |
tc |
54632634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 17 - 272
Target Start/End: Original strand, 54631933 - 54632201
Alignment:
| Q |
17 |
agctggtggcccgacgatatggaatctgaactcttcaagttctaggtgaataa-------------ctgactttttgaggacattgacagtgctttcatg |
103 |
Q |
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| T |
54631933 |
agctggtggcccgacgatatgaaatctgaactcttcaacttctaggtgaagaagttcttttcttgactgactttttgaggacattgacagtgctttcatg |
54632032 |
T |
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| Q |
104 |
gaaaattctcaatagtatatgttgtccttctactacttaattgtattttgatattaacctatgatgatattttatggtaggattatagtttctatcatct |
203 |
Q |
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| T |
54632033 |
gaaaattctcaatagtatatgttgtccttctactacttaattgtattttgatattaacctatgatgatattttatggtaggattatagtttctatcatct |
54632132 |
T |
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| Q |
204 |
tttgaatgttgactatcacttgtaactgtggttcagaacttaacctgttatgttaacaatctccttgct |
272 |
Q |
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| T |
54632133 |
tttgaatgttgactatcacttgtaactgtggttcagaacttaacctgttatgttaacaatctccttgct |
54632201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 52125432 - 52125333
Alignment:
| Q |
145 |
tgtattttgatattaacctatgatgatattttatggtaggattatagtttctatcatcttttgaatgttgactatcacttgta-actgtggttcagaact |
243 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||| || ||||||||| ||||||||||| |||||||| ||| | ||||||| |||||| |
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| T |
52125432 |
tgtattttgatgttaacggatgatgatattttatggtaggattcta-attctatcatgttttgaatgttatctatcactagtagaatgtggtttagaact |
52125334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 9e-69; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 438 - 691
Target Start/End: Complemental strand, 45313231 - 45312987
Alignment:
| Q |
438 |
acccactgatgaatataaaataaagacatggctaacaatcaggtaagccaaagcaatatgagatagttttggtcaatgccatgcgtactcgtattaacaa |
537 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||| |||||||||| | || || ||||||||| |
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| T |
45313231 |
acccactgatgaatataaaataaagagatggttaacaatcaggtaagccaaagcaatatgagatggttttgttcaatgccatccatagtcatattaacaa |
45313132 |
T |
|
| Q |
538 |
tcagggaagtttcataacttgaaggaaagaataccaggctgtggaatgtacaaatttcaatacgtgcatgtctgtgagtttttgtatgtttcaaatcttt |
637 |
Q |
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||||| |||||||||||||||| ||| |||| |||||||||||||||||||| |||||||||| ||||||| || |||| ||||||||||| | |
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| T |
45313131 |
tcaggaaagtttcataacttgagggagagaagaccaggctgtggaatgtacatatttcaatacttgcatgtgtg--------tgtaggtttcaaatctat |
45313040 |
T |
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| Q |
638 |
atatttatttgaaaatcagtgactttgggcaattctaattctgaattctgatgt |
691 |
Q |
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| T |
45313039 |
atatgtatttgaaaatcagtgac-ttgagctattctagttctgaattctgatgt |
45312987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 291 - 436
Target Start/End: Complemental strand, 45313418 - 45313279
Alignment:
| Q |
291 |
tctatcatgtctaacttaaatattccttctttgtttatattctaattctaatgttatgtttatcacgtgcaataatggcattagagtaaatcatccttaa |
390 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45313418 |
tctatcatgtctaacttagatattccttctttgtttatcttctaatt------ttatgtttatcacgtctaataatggcattagagtaaatcatccttaa |
45313325 |
T |
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| Q |
391 |
agcacttaaatatttcttttgttttcaaacttttctgctgcttacc |
436 |
Q |
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| T |
45313324 |
agcacttaaatatttcttttgttttcaaacttttctgctgcttacc |
45313279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 149 - 253
Target Start/End: Complemental strand, 45313595 - 45313481
Alignment:
| Q |
149 |
ttttgatattaacctatgatgatat------tttatggtaggattat----agtttctatcatcttttgaatgttgactatcacttgtaactgtggttca |
238 |
Q |
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| T |
45313595 |
ttttgatattaacctatgatgatatgatatttgtatggtaggattatttttagtttctatcatcttttgaatgttgactatcacttttaactgtgcttca |
45313496 |
T |
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| Q |
239 |
gaacttaacctgtta |
253 |
Q |
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||||||||| ||||| |
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| T |
45313495 |
gaacttaacttgtta |
45313481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 340 - 408
Target Start/End: Complemental strand, 45310405 - 45310338
Alignment:
| Q |
340 |
aatgttatgtttatcacgtgcaataatggcattagagtaaatcatccttaaagcacttaaatatttctt |
408 |
Q |
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|||||||||||||||||||| |||||||||| || ||||||||| || ||||||||| || |||||||| |
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| T |
45310405 |
aatgttatgtttatcacgtgtaataatggcaataaagtaaatcagcc-taaagcactaaattatttctt |
45310338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 18189720 - 18189767
Alignment:
| Q |
197 |
atcatcttttgaatgttgactatcacttgtaactgtggttcagaactt |
244 |
Q |
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| T |
18189720 |
atcatgttttgaatgttggctaacatttgtaactgtggttcagaactt |
18189767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0504 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0504
Description:
Target: scaffold0504; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 8226 - 8267
Alignment:
| Q |
203 |
ttttgaatgttgactatcacttgtaactgtggttcagaactt |
244 |
Q |
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| T |
8226 |
ttttgaatgttgtctaacatttgtaactgtggttcagaactt |
8267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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