View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9209_low_7 (Length: 534)
Name: NF9209_low_7
Description: NF9209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9209_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Complemental strand, 9920520 - 9919993
Alignment:
| Q |
1 |
cgtgagttgtcgcgtagcaattctttactcaaggattatggggttacagaagggaatgttttgcatttggtgattcgactggcagatctacagaccatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9920520 |
cgtgagttgtcgcgtagcaattctttactcaaggattatggggttacagaagggaatgttttgcatttggtgattcgactggcagatctacagaccatca |
9920421 |
T |
|
| Q |
101 |
gtgtgagaacttgttccgggaaggagtattcctttcaggttgaaaggtgtaaggatgtttggtatgttaagaaacagattgcggaaaaggaaaaagagtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9920420 |
gtgtgagaacttgttccgggaaggagtattcctttcaggttgaaaggtgtaaggatgtttggtatgttaagaaacagattgcggaaaaggaaaaagagtt |
9920321 |
T |
|
| Q |
201 |
tgctgatcctgagcagcaggaggttgtgtgtaacggggagctgcttgatgatcagaagcttattgatgatatctgtagcaattataatgatgcagtgata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9920320 |
tgctgatcctgagcagcaggaggttgtgtgtaacggggagctgcttgatgatcagaagcttattgatgatatctgtagcaattataatgatgcagttata |
9920221 |
T |
|
| Q |
301 |
catctttttgttagaacaaaatatgcggatgttagtacagggcttgatgagttgtctattgaagcaaaagaattgaatgattcgaagaattctgatgcta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
9920220 |
catctttttgttagaacaaaatatgcggatgttagtacagggcttgatgagttgtctattgaagcaaaagaattgaatgattcgaagaattctgatgcca |
9920121 |
T |
|
| Q |
401 |
aggaagctgattacgggaggaaatatgatagcaaagaagatgcgagaaaggagtatgaagccatcgaacgaattatgtcgagaaaagctcctggtggagg |
500 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9920120 |
aggaagctgattacgtgaggaaatatgatagcgaagaagatgcgagaaaggagtatgaagctatcgaacgaattatgtcgagaaaagctcctggtggagg |
9920021 |
T |
|
| Q |
501 |
tcttgttttggagccggttattgttaac |
528 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
9920020 |
tcttgttttggagccggttattgttaac |
9919993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 312
Target Start/End: Complemental strand, 48518505 - 48518378
Alignment:
| Q |
185 |
aaaaggaaaaagagtttgctgatcctgagcagcaggaggttgtgtgtaacggggagctgcttgatgatcagaagcttattgatgatatctgtagcaatta |
284 |
Q |
| |
|
||||||| ||| |||||| ||||| ||| ||||||| |||||||||| ||||| | | | || |||||||||||||||||||| ||||| |||| | |
|
|
| T |
48518505 |
aaaaggagaaacagtttgatgatctcgaggagcaggaacttgtgtgtaatggggaacggttggaggatcagaagcttattgatgacatctgctgcaagca |
48518406 |
T |
|
| Q |
285 |
taatgatgcagtgatacatctttttgtt |
312 |
Q |
| |
|
||||||||||||| | ||||| |||||| |
|
|
| T |
48518405 |
taatgatgcagtggtgcatctgtttgtt |
48518378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University