View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9209_low_8 (Length: 476)
Name: NF9209_low_8
Description: NF9209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9209_low_8 |
 | |
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| [»] scaffold0131 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 116 - 464
Target Start/End: Complemental strand, 4487176 - 4486827
Alignment:
| Q |
116 |
tgttgtgttggaggttttgcgggtttttgtgggtctgttggctgcgtttttacttgatg-gaagtgcagttttttctttgttgcgtgggggctgtcatag |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4487176 |
tgttgtgttggaggttttgcgggtttttgtgggtctgctggctgcatttttacttgatgtgaagtgcagttttttctttgttgcgtgggggctgtcatag |
4487077 |
T |
|
| Q |
215 |
gtccagcaggttgttgggtgatcaataggcgaaattacagtggctgtattttgctttattttttgggtctttgctagttctgtgttcagaaacaaacaat |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4487076 |
gtccagcaggttgttgggtgatcaataggcgtaattacaatggctgtattttgctttattttttgggtctttgctagttctgtgttcagaaacaaacaat |
4486977 |
T |
|
| Q |
315 |
agaaataaaaatagatgtaaaatactcatggatgtatggctattagtattactaagagttctatgtctttaggcaatatgttcagtgtgtttcatatcaa |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4486976 |
agaaataaaaatagatgtaaaatactcatggatgtatggctattagtattactaagagttctatgtctttaggcaatatgttcagtgtgtttcatatcaa |
4486877 |
T |
|
| Q |
415 |
ttgattggaatttcatattgatttataaagatgatagatatgatgtccat |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4486876 |
ttgattggaatttcatattgatttataaagatgatagatatgatgaccat |
4486827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 23 - 125
Target Start/End: Complemental strand, 4487295 - 4487193
Alignment:
| Q |
23 |
aggttatcgggtttctgttttgtgaattagattcttgtcttatcattttttctttcgaatggaacacaaactataggactgtgataggtgttgtgttgtg |
122 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4487295 |
aggttatcgggtttctattttgtgaattagattcttgtcttatcattttttctttcgaatggaacacaaactataggactgtgataggtgttgtgttgtg |
4487196 |
T |
|
| Q |
123 |
ttg |
125 |
Q |
| |
|
||| |
|
|
| T |
4487195 |
ttg |
4487193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 118 - 464
Target Start/End: Complemental strand, 10316831 - 10316484
Alignment:
| Q |
118 |
ttgtgttggaggttttgcgggtttttgtgggtctgttggctgcgtttttacttgatg-gaagtgcagttttttctttgttgcgtgggggctgtcataggt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | | ||||||||||||||||||||||| |||||||||||||| |
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|
| T |
10316831 |
ttgtgttggaggttttgcgggtttttgtgggtctgtaggctgtgtttttacttgatgtgcaatgcagttttttctttgttgcgtgagggctgtcataggt |
10316732 |
T |
|
| Q |
217 |
ccagcaggttgttgggtgatcaataggcgaaattacagtggctgtattttgctttattttttgggtctttgctagttctgtgttcagaaacaaacaatag |
316 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||| ||||||||| |||| |||||||||||||||| ||||| ||||||||||||||||||||||||| |
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|
| T |
10316731 |
ccagcaggttgtggggtgatcaataggcgtaattacggtggctgtagtttgatttattttttgggtctatgctacttctgtgttcagaaacaaacaatag |
10316632 |
T |
|
| Q |
317 |
aaataaaaatagatgtaaaatactcatggatgtatggctattagtattactaagagttctatgtctttaggcaatatgttcagtgtgtttcatatcaatt |
416 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10316631 |
aaataaaaatagatgtaaaatattcatggatgtatggctattagtattgctaagagttctatgtctttaggcaatatgttcagtgtgtttcatatcaatt |
10316532 |
T |
|
| Q |
417 |
gattggaatttcatattgatttataaagatgatagatatgatgtccat |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||| |||| |
|
|
| T |
10316531 |
gattggaatttcatattgatttataaagataatagagatgatgaccat |
10316484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 116 - 464
Target Start/End: Complemental strand, 19022601 - 19022257
Alignment:
| Q |
116 |
tgttgtgttggaggttttgcgggtttttgtgggtctgttggctgcgtttttacttgatg-gaagtgcagttttttctttgttgcgtgggggctgtcatag |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| | |||||| |||||||||||||| ||||||| ||| |
|
|
| T |
19022601 |
tgttgtgttggaggttttgcgggtttttgtcggtctgcaggctgcgtttttacttgatgtgcagtgcaattttttctttgttgtgtgggggttgt----- |
19022507 |
T |
|
| Q |
215 |
gtccagcaggttgttgggtgatcaataggcgaaattacagtggctgtattttgctttattttttgggtctttgctagttctgtgttcagaaacaaacaat |
314 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
19022506 |
gtccagcaggttgtggggtgatcaataggcgtaattacggtggctgtattttgctttattttttgggtctgtgctacttctgtgttcagaaacaaacaat |
19022407 |
T |
|
| Q |
315 |
agaaataaaaatagatgtaaaatactcatggatgtatggctattagtattactaagagttctatgtctttaggcaatatgttcagtgtgtttcatatcaa |
414 |
Q |
| |
|
|| ||||||||||||||||||||| |||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19022406 |
agtaataaaaatagatgtaaaatattcatcgatgtatggctattagaattgctaagagttctatgtctttaggcaatatgttcagtgtgtttcatatcag |
19022307 |
T |
|
| Q |
415 |
ttgattggaatttcatattgatttataaagatgatagatatgatgtccat |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||| |||| |
|
|
| T |
19022306 |
ttgattggaatttcatattgatttataaagataatagagatgatgaccat |
19022257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 116 - 464
Target Start/End: Complemental strand, 22066483 - 22066150
Alignment:
| Q |
116 |
tgttgtgttggaggttttgcgggtttttgtgggtctgttggctgcgtttttacttgatg-gaagtgcagttttttctttgttgcgtgggggctgtcatag |
214 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
22066483 |
tgttgtgttggagattttgcgggtttttgtgggtctgcaggctgcgtttttacaatatgtgcagtgcagttttttctttgttgcgtgggggctgt----- |
22066389 |
T |
|
| Q |
215 |
gtccagcaggttgttgggtgatcaataggcgaaattacagtggctgtattttgctttattttttgggtctttgctagttctgtgttcagaaacaaacaat |
314 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
22066388 |
gtccagcaggttgtggggtgatcaataggcgtaattacggtggctgtattttgctttattttttgggtct-----------gtgttcagaaacaaacaat |
22066300 |
T |
|
| Q |
315 |
agaaataaaaatagatgtaaaatactcatggatgtatggctattagtattactaagagttctatgtctttaggcaatatgttcagtgtgtttcatatcaa |
414 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22066299 |
agaaataaaaattgatgtaaaatattcatggatgtatggctattagtattgctaagagttctatgtctttaggcaatatgtttagtgtgtttcatatcag |
22066200 |
T |
|
| Q |
415 |
ttgattggaatttcatattgatttataaagatgatagatatgatgtccat |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||| |||| |
|
|
| T |
22066199 |
ttgattggaatttcatattgatttataaagataatagagatgatgaccat |
22066150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 35 - 125
Target Start/End: Complemental strand, 22066590 - 22066500
Alignment:
| Q |
35 |
ttctgttttgtgaattagattcttgtcttatcattttttctttcgaatggaacacaaactataggactgtgataggtgttgtgttgtgttg |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
22066590 |
ttctgttttgtgaattagattcttgtcttatcattttttctttcgaatggaacacaaactagaggactgtgataggtgttgtgttgtgttg |
22066500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 35 - 125
Target Start/End: Complemental strand, 19022714 - 19022623
Alignment:
| Q |
35 |
ttctgttttgtgaattagattcttgtcttatcatttttt-ctttcgaatggaacacaaactataggactgtgataggtgttgtgttgtgttg |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19022714 |
ttctgttttgtgaattagattcttgtcttatcatttttttctttcgaatggaacacaaactagaggactgtgataggtgttgtgttgtgttg |
19022623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 35 - 258
Target Start/End: Original strand, 13514 - 13759
Alignment:
| Q |
35 |
ttctgttttgtgaattagattcttgtcttatcattttttctttcgaatggaacacaaactataggactgtgataggtgttgtgttgtgttg--------- |
125 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| |||||||||| ||||||||||||||||| ||||||| | ||||||||||||||||||| |
|
|
| T |
13514 |
ttctgttttgtgaaatagattcctgtcttatctttttttcttttgaatggaacacaaactagaggactgcgttaggtgttgtgttgtgttgtggctgctg |
13613 |
T |
|
| Q |
126 |
------------gaggttttgcgggtttttgtgggtctgttggctgcgtttttacttgatg-gaagtgcagttttttctttgttgcgtgggggctgtcat |
212 |
Q |
| |
|
||||||| ||||||||||||||||||| | ||||||||||| ||||||| | || || ||||||||| |||||||||||||||||||| |
|
|
| T |
13614 |
cctgttgtgtttgaggtttcgcgggtttttgtgggtctgctagctgcgtttttccttgatgtgcagcgcggttttttctatgttgcgtgggggctgtcat |
13713 |
T |
|
| Q |
213 |
aggtccagcaggttgttgggtgatcaataggcgaaattacagtggc |
258 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| |||||| ||||| |
|
|
| T |
13714 |
aggtccagcaggttgtggagtgatcaataggcataattacggtggc |
13759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 305 - 406
Target Start/End: Original strand, 14100 - 14201
Alignment:
| Q |
305 |
aacaaacaatagaaataaaaatagatgtaaaatactcatggatgtatggctattagtattactaagagttctatgtctttaggcaatatgttcagtgtgt |
404 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
14100 |
aacaaacaatagaaataaaaatagaggtaaaatattcatggatgtatggctattagtattactaagagttctatgtctttaggcaatatgttcagtatgt |
14199 |
T |
|
| Q |
405 |
tt |
406 |
Q |
| |
|
|| |
|
|
| T |
14200 |
tt |
14201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 32091979 - 32092045
Alignment:
| Q |
38 |
tgttttgtgaattagattcttgtcttatcattttt--tctttcgaatggaacacaaactataggact |
102 |
Q |
| |
|
||||||||||||||||||| | |||| | || ||| |||||| ||||||||||||||||||||||| |
|
|
| T |
32091979 |
tgttttgtgaattagattcctatcttttaatctttgttctttctaatggaacacaaactataggact |
32092045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 12287209 - 12287137
Alignment:
| Q |
35 |
ttctgttttgtgaattagattcttgtcttatcattttt--tctttcgaatggaacacaaactataggactgtg |
105 |
Q |
| |
|
|||| ||||||||||||||||| | |||| | || ||| |||||| |||||||||||||||| ||||||||| |
|
|
| T |
12287209 |
ttctcttttgtgaattagattcctatcttttaatctttgttctttctaatggaacacaaactacaggactgtg |
12287137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 9391978 - 9391906
Alignment:
| Q |
35 |
ttctgttttgtgaattagattcttgtcttatcattttt--tctttcgaatggaacacaaactataggactgtg |
105 |
Q |
| |
|
|||||||||||||||||||||| | | || | |||||| |||||| |||||||||||||||| | ||||||| |
|
|
| T |
9391978 |
ttctgttttgtgaattagattcctattttttaatttttgttctttctaatggaacacaaactacaagactgtg |
9391906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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