View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9209_low_9 (Length: 256)
Name: NF9209_low_9
Description: NF9209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9209_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 31046230 - 31046448
Alignment:
| Q |
19 |
gaccagaaggcagcgggagtggagcagaattggggactcttttatcatgacatgactcctgtttatcctcttctaagttgttgatttgtaacattgaata |
118 |
Q |
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| T |
31046230 |
gaccagaaggcagctggagtggagcagaattggggactcttttatcatgacatgactcctgtttatcctcttctaagttgttgatttgtaacattgaata |
31046329 |
T |
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| Q |
119 |
aatcaaattgtactgaattgtgttgcttagatggctaaaagtagcgccataaaccagttggttcagtttgtatcttgtatgatgaaattaaccacttgat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31046330 |
aatcaaattgtactgaattgtgttgcttagatggctaaaagtagcgccataaaccagttggttcagtttgtatcttgtatgatgaaattaaccacttgat |
31046429 |
T |
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| Q |
219 |
aataaatgaaaattgtgat |
237 |
Q |
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||||||||||||||||||| |
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| T |
31046430 |
aataaatgaaaattgtgat |
31046448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 31041581 - 31041692
Alignment:
| Q |
19 |
gaccagaaggcagcgggagtggagcagaattggggactcttttatcatgacatgactcctgtttatcctcttctaagttgttgatttgtaacattgaata |
118 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31041581 |
gaccagaaggcagctggagtggagcagaattggggactcttttatcatgacttgactcctgtttatcctcttctaagttgttgatttgtaacattgaata |
31041680 |
T |
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| Q |
119 |
aatcaaattgta |
130 |
Q |
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| T |
31041681 |
aatcaaattgta |
31041692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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