View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9210_high_1 (Length: 430)
Name: NF9210_high_1
Description: NF9210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9210_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 54737653 - 54738076
Alignment:
| Q |
1 |
ggacaaaaatttgaatttgaagattttttaattagaaaatgatggattgagcaaaatgttaaaaatttcaatggtaaatataaacatgaatacgctaaat |
100 |
Q |
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| T |
54737653 |
ggacaaaaatttgaatgtgaagattttttaattagaaaatgatggattgagcaaaatgttaaaaatttcaatggtaaatataaacatgaatacactaaat |
54737752 |
T |
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| Q |
101 |
aataagcagcgcaatgactattgttttcaataacataaggcctttgcttattgtcgaatgctcctctttggaagtttagaacccactttgcagtcctttc |
200 |
Q |
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| T |
54737753 |
aataagcagtgcaatgactattgttttcaataacataaggcctttgcttattgtcgaatgctcctctttggaagtttagaacccactttgcagtcctttc |
54737852 |
T |
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| Q |
201 |
ttttctccctgggtcgtgttgtcgaggaaaccaaaagcataacttgtttgcttgtataggatgagttcgggtcaatcttctccatgtttctgactatgca |
300 |
Q |
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| T |
54737853 |
ttttctccctgggtcgtgttgttgaggaaaccaaaagcataacttgtttgcttgtataggatgagttcgggtcaatcttctccatgtttctgactatgca |
54737952 |
T |
|
| Q |
301 |
ccggttgtagcttcatgctatttatagttatgtgcataccatctaggttaaagcttgatagattgaacctgaaatgtttgggttcattatttttgtctca |
400 |
Q |
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| T |
54737953 |
ccggttgtagcttcatgctatttatagttatgtgcataccatctaagttaaagcttgatagattgaacctgaaatgtttgggttcgttatttttgtctca |
54738052 |
T |
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| Q |
401 |
gatgtgtaggtttgtgatgtccat |
424 |
Q |
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| T |
54738053 |
gatgtgtaggtttgtgctgtccat |
54738076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 308
Target Start/End: Original strand, 54739273 - 54739340
Alignment:
| Q |
241 |
aacttgtttgcttgtataggatgagttcgggtcaatcttctccatgtttctgactatgcaccggttgt |
308 |
Q |
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| T |
54739273 |
aacttgtttgctagcatgagatgtgttcgggtccatcttctccatgtgtctgattatgcaccggttgt |
54739340 |
T |
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