View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9210_low_1 (Length: 619)
Name: NF9210_low_1
Description: NF9210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9210_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 13 - 601
Target Start/End: Complemental strand, 37304471 - 37303882
Alignment:
| Q |
13 |
gatggacatcacttgaggattgaaaattctcgccttcgagaagaggtatacattcatcgcattgattcaaaaactacaccaagtttatggtgcgattgat |
112 |
Q |
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| T |
37304471 |
gatgaacatcacttgaggattgaaaattctcgccttcgagaagaggtatacattcatcgcattgattcaaaaactacaccaagtttatggtgcgattgat |
37304372 |
T |
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| Q |
113 |
agacacatatatcgagaccaatctggttgaactaaatgcggttaaaaaatgagataacaaatacattcgaggtcttggatcccctacaacagttgcacgg |
212 |
Q |
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| T |
37304371 |
agacacatatatcgagaccaatctggttgaactaaatgcggttaaaaaatgagataacaaatacattcgaggtcttggatcccctacaacagttgcacgg |
37304272 |
T |
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| Q |
213 |
tgcagcaacgctattgtaggggatcaaaacctatatttttcggcgttcnnnnnnngtatgagattaaaatcaacgcagattttgttgtctccacgaccaa |
312 |
Q |
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| T |
37304271 |
tgcaacaacactattgtaggggatcgaaacctatatttttcggcgtt-ggaaaaagtatgagattaaaatcaatgcagattttgttgtctccacgaccaa |
37304173 |
T |
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| Q |
313 |
agttaatatcgcatcaatcatattaatttaattgtaattcactaaagtataaaatttgcaaagcgactttgtttttatcaaaatttcgttttaaagtgat |
412 |
Q |
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| T |
37304172 |
agttaatatcgcatcaatcatattaatttaattgtaattcactaaagtataaaatttgcaaagctactttgtttttatcaaaatttcgttttaaagtgat |
37304073 |
T |
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| Q |
413 |
tgacctattgttattctatctctatcatgataa-aaaatcttcttcatgattaactatattttaaccttctttaattttggtgttaa-tttcagattgat |
510 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
37304072 |
tgacctattgttattctatctctatcatgataaaaaaatcttcttcatgatcaactatattttatccttctttaattttggtgttaattttcagattgat |
37303973 |
T |
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| Q |
511 |
aggatatctgccattgctgccaagtacgtagggaagccagtggtgagctatccactcctctccccttcatcggttcctcctcgtcctctag |
601 |
Q |
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| T |
37303972 |
aggatatctgccattgctgccaagtacgtagggaagccagtggtgagctatccactcctctccccttcatcggttcctcctcgtcctctag |
37303882 |
T |
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