View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9210_low_10 (Length: 309)
Name: NF9210_low_10
Description: NF9210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9210_low_10 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 10 - 309
Target Start/End: Complemental strand, 25622344 - 25622045
Alignment:
| Q |
10 |
tggacatcaaaagcatctaaaatccacttgaagaaattagatgaaagagctaatcacactcacaagaaaagggatactggttcttaataaagttgagcta |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25622344 |
tggacatcaaaagcatctaaaatccacttgaagaaattagatgaaagagctaatcacactcacaagaaaagggatactggttcttaataaagttgagcta |
25622245 |
T |
|
| Q |
110 |
cgacctatcggaaacaaagttaatttctaatcagtttagttgaagcgaggtgatgctgaaacggaacgtttaccagtttcaccgggttcacgtgttggtt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
25622244 |
cgacctatcggaaacaaagttaatttctaatcagtttagttgaagcaaggtgatgctgaaacggaacgtttaccagtttcaccgggttcacatgttggtt |
25622145 |
T |
|
| Q |
210 |
ctgctgcaaaggctgtgggctcaacggtccttcatcctctgtaatacgaaatacagtaacctgcagcactacgtcctttgttgcaaccagctcaaacaca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25622144 |
ctgctgcaaaggctgtgggctcaacggtccttcatcctctgtaatacgaaatacagtaacctgcagcactacctcctttgttgcaaccagctcaaacaca |
25622045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University