View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9210_low_12 (Length: 240)
Name: NF9210_low_12
Description: NF9210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9210_low_12 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 3462235 - 3462459
Alignment:
| Q |
16 |
aacaccgacttaacaagtcctcgcgagcccctcgccaccacgctccgccacatataaccagaatccatcttagaaataaaattagcattcttacatatca |
115 |
Q |
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| T |
3462235 |
aacaccgacttaacaagtcttcgcgagcccctcgccaccacgctccgccacatataaccagaatccatcttagaaataaaattagcattcttacatatca |
3462334 |
T |
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| Q |
116 |
atacagcacctttaccactcaactttgctaacctcaacactcttgtaaaatcttttctccgagaatcaacaaccaagaaatctagtccgatcaaaccatc |
215 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3462335 |
atacagaacctttaccactcaactttgctaacctcaacactctagtaaaatcttttctccgagaatcaacaaccaagaaatctattccgatcaaaccatc |
3462434 |
T |
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| Q |
216 |
catcacttcctccggttctcctacc |
240 |
Q |
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||||||||||||||||||||||||| |
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| T |
3462435 |
catcacttcctccggttctcctacc |
3462459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 43 - 236
Target Start/End: Original strand, 3452240 - 3452433
Alignment:
| Q |
43 |
cccctcgccaccacgctccgccacatataaccagaatccatcttagaaataaaattagcattcttacatatcaatacagcacctttaccactcaactttg |
142 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
3452240 |
ccccgcgccaccacgctccgccatatataaccagaatccatcttagaaataaaattagcatttttacatatcaacacagcacctttaccactcaactttg |
3452339 |
T |
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| Q |
143 |
ctaacctcaacactcttgtaaaatcttttctccgagaatcaacaaccaagaaatctagtccgatcaaaccatccatcacttcctccggttctcc |
236 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| | ||||||||||| ||||| || |||||||| |
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| T |
3452340 |
ctaacctcaacactcttgtaaaatcctttctccgagaatcaacaaccaagaaatctattcctactaaaccatccataacttcttctggttctcc |
3452433 |
T |
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