View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9210_low_13 (Length: 208)

Name: NF9210_low_13
Description: NF9210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9210_low_13
NF9210_low_13
[»] chr3 (18 HSPs)
chr3 (20-208)||(2748497-2748685)
chr3 (20-208)||(2856261-2856449)
chr3 (39-208)||(2768587-2768756)
chr3 (20-208)||(2839051-2839239)
chr3 (26-208)||(2789863-2790045)
chr3 (37-207)||(2818073-2818243)
chr3 (38-208)||(2806778-2806948)
chr3 (26-207)||(2796866-2797047)
chr3 (63-207)||(2758756-2758900)
chr3 (20-207)||(5412408-5412593)
chr3 (100-170)||(3200526-3200596)
chr3 (100-170)||(3357852-3357922)
chr3 (101-152)||(3311128-3311179)
chr3 (101-152)||(3322727-3322778)
chr3 (107-162)||(22104280-22104335)
chr3 (104-161)||(3304440-3304497)
chr3 (86-162)||(22621774-22621850)
chr3 (95-147)||(30990147-30990199)
[»] scaffold0691 (1 HSPs)
scaffold0691 (20-207)||(6604-6791)
[»] chr1 (2 HSPs)
chr1 (81-176)||(34975042-34975137)
chr1 (104-170)||(41947701-41947767)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 2748497 - 2748685
Alignment:
Q  20 gtatcgtttgtcctgggggaagtgttccagttcctaaaagaagaaacaaatcttctgagaagtgtacacagagatttttcagacatcaaagatgaacttg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2748497 gtatcgtttgtcctgggggaagtgttccagttcctaaaagaagaaacaaatcttctgagaagtgtacacagagatttttcagacatcaaagatgaacttg 2748596  T
Q  120 agagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacactaacgatagaataagaacttgggtgaagcag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2748597 agagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacactaacgatggaataagaacttgggtgaagcag 2748685  T

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Target: chr3; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 2856449 - 2856261
Alignment:
Q  20 gtatcgtttgtcctgggggaagtgttccagttcctaaaagaagaaacaaatcttctgagaagtgtacacagagatttttcagacatcaaagatgaacttg 119  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  2856449 gtattgtttgccctgggggaagtgttccagttcctaaaagaagaaacaaatcttttgagaggtgtacacagagatttttcagacatcaaagatgaacttg 2856350  T
Q  120 agagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacactaacgatagaataagaacttgggtgaagcag 208  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  || ||| |||||||||||||||||||||||    
T  2856349 agagcattcaagtcttcctcaaagatgcagacataagggctgcggatgaagcagacatcaatgatggaataagaacttgggtgaagcag 2856261  T

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Target: chr3; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 39 - 208
Target Start/End: Original strand, 2768587 - 2768756
Alignment:
Q  39 aagtgttccagttcctaaaagaagaaacaaatcttctgagaagtgtacacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcct 138  Q
    |||| ||||| ||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2768587 aagttttccaattcctaaaagaagaaacaaatctgctgagtggtgtacacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcct 2768686  T
Q  139 caaagatgcagacagaagggctgcggatgaagcagacactaacgatagaataagaacttgggtgaagcag 208  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  2768687 caaagatgcagacagaagggctgcggatgaagcagacaccaacgatggaataagaacttgggtgaagcag 2768756  T

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Target: chr3; HSP #4
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 2839239 - 2839051
Alignment:
Q  20 gtatcgtttgtcctgggggaagtgttccagttcctaaaagaagaaacaaatcttctgagaagtgtacacagagatttttcagacatcaaagatgaacttg 119  Q
    |||| ||||| ||| |||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  2839239 gtattgtttgccctaggggaagtgttcaaattcctaaaagaagaaacaaatcttctgagaggtgtacacagagatttttcagatatcaaagatgaacttg 2839140  T
Q  120 agagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacactaacgatagaataagaacttgggtgaagcag 208  Q
    ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||    
T  2839139 agatcattctagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacatcaacgatggaataagaacttgggtgaagcag 2839051  T

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Target: chr3; HSP #5
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 26 - 208
Target Start/End: Original strand, 2789863 - 2790045
Alignment:
Q  26 tttgtcctgggggaagtgttccagttcctaaaagaagaaacaaatcttctgagaagtgtacacagagatttttcagacatcaaagatgaacttgagagca 125  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||| |||||  |||| |||| |||||||| ||||||||||||||||||||||||||    
T  2789863 tttgtcctgggggaagtgttggaattcctaaaagaagaaacaaatctcctgagtggtgtgcacaaagattttttagacatcaaagatgaacttgagagca 2789962  T
Q  126 ttcaagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacactaacgatagaataagaacttgggtgaagcag 208  Q
    ||||||||||||||||||||||||| | ||| ||||| |||||||||||||| || ||| |||||||||||||||||||||||    
T  2789963 ttcaagtcttcctcaaagatgcagatataagagctgcagatgaagcagacaccaatgatggaataagaacttgggtgaagcag 2790045  T

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Target: chr3; HSP #6
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 37 - 207
Target Start/End: Original strand, 2818073 - 2818243
Alignment:
Q  37 ggaagtgttccagttcctaaaagaagaaacaaatcttctgagaagtgtacacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttc 136  Q
    ||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| || ||||| |||||||||    
T  2818073 ggaagtgtttcagttcctaaaagaagaaacaaagcttctgagaggtgtacacagagatttttcagacatcaaagatgaactagaaagcatccaagtcttc 2818172  T
Q  137 ctcaaagatgcagacagaagggctgcggatgaagcagacactaacgatagaataagaacttgggtgaagca 207  Q
    |||||||||||||| |||||||| || |||||||| ||| | || ||| |||||||||| |||||||||||    
T  2818173 ctcaaagatgcagatagaagggcagcagatgaagcggacgccaatgatggaataagaacatgggtgaagca 2818243  T

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Target: chr3; HSP #7
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 38 - 208
Target Start/End: Original strand, 2806778 - 2806948
Alignment:
Q  38 gaagtgttccagttcctaaaagaagaaacaaatcttctgagaagtgtacacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcc 137  Q
    ||||||||||  |||||||||||||||||||||||||| | | ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  2806778 gaagtgttccgattcctaaaagaagaaacaaatcttctaaaaggtgtacacacagaattttcagacatcaaagatgaacttgagagcattcaagtcttcc 2806877  T
Q  138 tcaaagatgcagacagaagggctgcggatgaagcagacactaacgatagaataagaacttgggtgaagcag 208  Q
    ||||||||||||| ||||| || || |||||||||||||| || ||| |||| ||||||||||| ||||||    
T  2806878 tcaaagatgcagatagaagagcagcagatgaagcagacacaaatgatggaattagaacttgggtaaagcag 2806948  T

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Target: chr3; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 26 - 207
Target Start/End: Original strand, 2796866 - 2797047
Alignment:
Q  26 tttgtcctgggggaagtgttccagttcctaaaagaagaaacaaatcttctgagaagtgtacacagagatttttcagacatcaaagatgaacttgagagca 125  Q
    |||| ||||||| |||||||  | ||||||||||||||||||||||| |||||  |||| |||| ||||||||||||||||| |||||||||||||||||    
T  2796866 tttgccctggggaaagtgtttgaattcctaaaagaagaaacaaatctgctgagtcgtgtgcacaaagatttttcagacatcacagatgaacttgagagca 2796965  T
Q  126 ttcaagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacactaacgatagaataagaacttgggtgaagca 207  Q
    ||||||| ||||||||||||||||| | ||| ||||| |||||| | ||||| || ||| ||||||||||||||||||||||    
T  2796966 ttcaagttttcctcaaagatgcagatacaagagctgcagatgaaaccgacaccaatgatggaataagaacttgggtgaagca 2797047  T

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Target: chr3; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 63 - 207
Target Start/End: Original strand, 2758756 - 2758900
Alignment:
Q  63 aaacaaatcttctgagaagtgtacacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgc 162  Q
    ||||||||||||| ||| ||||||||| |||||| | ||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| ||    
T  2758756 aaacaaatcttctaagaggtgtacacaaagatttcttagacatcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagatagaagggcagc 2758855  T
Q  163 ggatgaagcagacactaacgatagaataagaacttgggtgaagca 207  Q
     ||||||||||| || || ||  |||||||||| |||||||||||    
T  2758856 agatgaagcagaaaccaatgaaggaataagaacatgggtgaagca 2758900  T

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Target: chr3; HSP #10
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 5412408 - 5412593
Alignment:
Q  20 gtatcgtttgtcctgggggaagtgttccagttcctaaaagaagaaacaaatcttctgagaagtgtacacagagatttttcagacatcaaagatgaacttg 119  Q
    |||| ||||| ||| ||| || ||||||| |||||| |||||||||||||||  |||| | || ||||||||  |||||||||||||||||||||||| |    
T  5412408 gtattgtttgcccttgggaaactgttccaattcctagaagaagaaacaaatcggctgaaaggtatacacaga--tttttcagacatcaaagatgaactag 5412505  T
Q  120 agagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacactaacgatagaataagaacttgggtgaagca 207  Q
    | | |||||||  |||||||||||||||||||| ||||||||| |||||||| ||| | || ||| |||||||||| |||||||||||    
T  5412506 aaatcattcaatccttcctcaaagatgcagacaaaagggctgcagatgaagcggacgccaatgatggaataagaacatgggtgaagca 5412593  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 3200526 - 3200596
Alignment:
Q  100 agacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaag 170  Q
    |||||||||| |||||||||||||||||||||| |  ||||| |||||||||| || |||||| |||||||    
T  3200526 agacatcaaatatgaacttgagagcattcaagtttcactcaaggatgcagacacaaaggctgctgatgaag 3200596  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 170
Target Start/End: Complemental strand, 3357922 - 3357852
Alignment:
Q  100 agacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaag 170  Q
    ||||||||||||||||||||||| ||| ||| |||  ||||| |||||||||| ||||||||| |||||||    
T  3357922 agacatcaaagatgaacttgagatcatccaattctcactcaaggatgcagacacaagggctgctgatgaag 3357852  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 3311179 - 3311128
Alignment:
Q  101 gacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagaca 152  Q
    |||||||||||||| ||||||||||| |||| ||||||||| ||||| ||||    
T  3311179 gacatcaaagatgaccttgagagcatccaagccttcctcaaggatgctgaca 3311128  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 3322778 - 3322727
Alignment:
Q  101 gacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagaca 152  Q
    |||||||||||||| ||||||||||| |||| ||||||||| ||||| ||||    
T  3322778 gacatcaaagatgaccttgagagcatccaagccttcctcaaggatgctgaca 3322727  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 107 - 162
Target Start/End: Original strand, 22104280 - 22104335
Alignment:
Q  107 aaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgc 162  Q
    |||||||||||||| ||||| |||| ||||||||||||||| || ||||| |||||    
T  22104280 aaagatgaacttgaaagcatccaagccttcctcaaagatgctgatagaagagctgc 22104335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 3304497 - 3304440
Alignment:
Q  104 atcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctg 161  Q
    ||||||||||| ||||||||||| |||  ||||||||| ||||| ||||||| |||||    
T  3304497 atcaaagatgatcttgagagcatccaatccttcctcaaggatgctgacagaaaggctg 3304440  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 22621850 - 22621774
Alignment:
Q  86 cacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgc 162  Q
    |||| ||| ||| ||||||| |||||||||||||| ||||| |||| |||||| || ||||| || ||||| |||||    
T  22621850 cacaaagaatttgcagacattaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgc 22621774  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 30990199 - 30990147
Alignment:
Q  95 ttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgc 147  Q
    |||||||| || |||||||||||||| |||||||||| ||| || ||||||||    
T  30990199 ttttcagatattaaagatgaacttgaaagcattcaagcctttcttaaagatgc 30990147  T

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Target: scaffold0691 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 6791 - 6604
Alignment:
Q  20 gtatcgtttgtcctgggggaagtgttccagttcctaaaagaagaaacaaatcttctgagaagtgtacacagagatttttcagacatcaaagatgaacttg 119  Q
    |||| ||||| ||| || ||| ||||||| ||||||||| |||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||    
T  6791 gtattgtttgccctcggagaattgttccaattcctaaaaaaagaaacaaatcttctgagaggtgtacacacagattttacagacatcaaagatgaacttg 6692  T
Q  120 agagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacactaacgatagaataagaacttgggtgaagca 207  Q
    | ||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||| ||| ||||||||||||||||||||||    
T  6691 aaagcattcaaatcttcctcaaagatgcagacagaaaggctgcagatgaagcagacactaatgatggaataagaacttgggtgaagca 6604  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 176
Target Start/End: Original strand, 34975042 - 34975137
Alignment:
Q  81 gtgtacacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaagcagaca 176  Q
    |||| |||| ||| ||| ||||||| ||| ||||||| || |||||||||| ||||||||||||| | || ||||| ||||| | ||||| |||||    
T  34975042 gtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagattctgatagaagagctgcagctgaaggagaca 34975137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 41947767 - 41947701
Alignment:
Q  104 atcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaag 170  Q
    |||||| ||||||||||||||||  ||| ||| ||||| |||||||||| ||||||||  |||||||    
T  41947767 atcaaacatgaacttgagagcatcaaagcctttctcaaggatgcagacacaagggctgttgatgaag 41947701  T

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