View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9210_low_2 (Length: 569)
Name: NF9210_low_2
Description: NF9210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9210_low_2 |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 18 - 569
Target Start/End: Original strand, 44529578 - 44530130
Alignment:
| Q |
18 |
atgttgtgcattgtattgattggagtggaagattctannnnnnn-gtacttccaaatgaatggctttttgatgttatctttcattatttacaaggtattg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44529578 |
atgttgtgcattgtattgattggagtggaagattctattttttttgtacttccaaatgaatggctttttgatgttgtctttcattatttacaaggtattg |
44529677 |
T |
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| Q |
117 |
ttacgcggaggccgctggtactgcaacttcataagaccgaaaatggccaggaatatgctgagtttcttcacttgccaagaaagagattcaccgacttcgg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44529678 |
ttacgcggaggccgctggtactgcaacttcataagaccgaaaatggccaggaatatgctgagtttcttcacttgccaagaaagagattcaccgacttcgg |
44529777 |
T |
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| Q |
217 |
taactgaagtttctaacccaaaattatgtataacgaagtttcttattttgtttcaaaatgatatgccataatgagtagctaagctagcatcgtgtaaagc |
316 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44529778 |
taactgaaatttctaacccaaaattatgtataacgaagtttcttattttgtttcaaaatgatatgccataatgagtagctaagctagcatcgtgtaaagc |
44529877 |
T |
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| Q |
317 |
cttatgtaattgtttcatttttatggtaatgcgccattattaattgatattattaagacttaatggataatttatcttctcacaggtagtggcagattta |
416 |
Q |
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| T |
44529878 |
cttatgtaattgtttcatttttatggtaatgcgccattattaattgatattattaagacttaatggataatttatcttctcacaggtagtggcagattta |
44529977 |
T |
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| Q |
417 |
accacttgtggcaaaaatttactagttaccattaagtcataggaaagtttatttagtttatagcgaacttaagtttcaaactggcaatcatttataatac |
516 |
Q |
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| T |
44529978 |
accacttgtggcaaaaatttactagttaccattaagtcataggaaagtttatttagtttatagcgaacttaagtttcaaactggcaatcatttataagac |
44530077 |
T |
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| Q |
517 |
ttactttatgtctttaaagtaaatagaggggtaaccttggcgcaaatggtaaa |
569 |
Q |
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| T |
44530078 |
ttactttatgtctttaaagtaaatagaggggtaaccttggcgcaactggtaaa |
44530130 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 569
Target Start/End: Complemental strand, 22930254 - 22930221
Alignment:
| Q |
536 |
taaatagaggggtaaccttggcgcaaatggtaaa |
569 |
Q |
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| T |
22930254 |
taaatagaggggtaaccttggcgcaactggtaaa |
22930221 |
T |
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