View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9210_low_3 (Length: 543)
Name: NF9210_low_3
Description: NF9210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9210_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Original strand, 21482811 - 21483335
Alignment:
| Q |
1 |
cctttaaagccattatattgcagccacaattacggttgttgaccataatttaaaacttattcaagttcaataacaaatgattttgcattaacatgcattt |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21482811 |
cctttaaaaccattatattgcagccacaattacggttgttgaccataatttaaaacttattcaagttcaataacaaatgattttgcatttacatgcattt |
21482910 |
T |
|
| Q |
101 |
ctaataatcacacatcgtagatcatataaacaaccaaaacatatgatctaacaataatatacagcttaagtccacaaacctgtctcctatcggatgcact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
21482911 |
ctaataatcacacatcgtagatcatataaacaaccaaaacatataatctaacaataatataaagctgaagtccacaaacctgtctcctatcggatgcact |
21483010 |
T |
|
| Q |
201 |
tcgaccctggtgagaactctgtgtctgcatggtggggcggtcacggtccactggaggctgcgtcggctcagccggaacaacaggtgccaaggaagctgct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21483011 |
tcgaccctggtgagaactctgtgtctgcatggtggggcggtcacggtccactggaggctgcgtcggctcagccggaacaacaggtgccaaggaggctgct |
21483110 |
T |
|
| Q |
301 |
gtcccaccggtcatagtctgccaatacatccagttcgctggatttgcatgagaaccaccagcagcaacattggtgcaattatcaccactacctaatctcg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21483111 |
gtcccaccggtcatagtctgccaatacatccagttcgctggatttgcatgagaaccaccagcagcaacattggtgcaactatcaccactacctaatctcg |
21483210 |
T |
|
| Q |
401 |
caagtggatcagaaccttgaatattctgatgatggttattattatgatgcctatgatgagacataaaccgccgttgccgagccatcctcttctttctagc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21483211 |
caagtggatcagaaccttgaatattctgatgatggttaatattatgatgcctatgatgagacataaaccgccgttgccgagccatcctcttctttctagc |
21483310 |
T |
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| Q |
501 |
ttcttttgtagcagaaggacctaac |
525 |
Q |
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| T |
21483311 |
ttcttttgtagcagaaggacctaac |
21483335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 21490752 - 21490796
Alignment:
| Q |
13 |
ttatattgcagccacaattacggttgttgaccataatttaaaact |
57 |
Q |
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|||||| ||||||||||||||||||| ||||| ||||||||||| |
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| T |
21490752 |
ttatatcgcagccacaattacggttgcagaccaaaatttaaaact |
21490796 |
T |
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