View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9210_low_8 (Length: 310)
Name: NF9210_low_8
Description: NF9210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9210_low_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 12200976 - 12200674
Alignment:
| Q |
1 |
tgagaaaaaggaaaattgagtgatgagatttttgtgagtgatgtggtttaatggtgttgaatattgaggttgtgtgtgggggtttatgtagacactaaga |
100 |
Q |
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| T |
12200976 |
tgagaaaaaggaaaattgagtgatgagatttttgtgagtgttgtggtttaatggtgttgaatattgaggttgtgtgtgggggtttatgtagacactaaga |
12200877 |
T |
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| Q |
101 |
tggagtgtgtatggtttgtgaaagtgtgtgaactgttgtgtgtagcactggatctagctggaaattttggtggatcccactggattctactttgaaaatg |
200 |
Q |
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| T |
12200876 |
tggagtgtatatggtttgtgaaagagtgtgaactgtt-tgtgtagcactggatctagctggaaattttggtggatcccactggattctactttgaaaatg |
12200778 |
T |
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| Q |
201 |
atgttgaataagcacatatcacagtcatccggatcgataatatctgatgtcannnnnnnnnnnnnngtcttaaaaagaatttagtttaaggtaaattaat |
300 |
Q |
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||||||||||||||||||||| ||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12200777 |
atgttgaataagcacatatcatagtcatccggatctataataactgatgtca------ttttttttgtcttaaaaagaatttagtttaaggtaaattaat |
12200684 |
T |
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| Q |
301 |
tgttaagttc |
310 |
Q |
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|||||||||| |
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| T |
12200683 |
tgttaagttc |
12200674 |
T |
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