View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9211_low_10 (Length: 261)
Name: NF9211_low_10
Description: NF9211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9211_low_10 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 125014 - 124754
Alignment:
| Q |
1 |
caaagaggtgatttctagttcaccaaactatgttgttggtttataatatattgttgttataacaagtattttttgtttgcttctaattgccataagaata |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
125014 |
caaagaggtgatttttagttcaccaaactatgttgttggtttataatatattgttgttataacaagtattttttgtttgcttctaattgccataagaata |
124915 |
T |
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| Q |
101 |
atatgttgtcacatttttcagggtgatcgtattcaagtcattttgccaaatgaattcaaagatcagtttaagagtagagttgctgagaacactactttta |
200 |
Q |
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| T |
124914 |
atatgttgtcacatttttcagggtgatcgtattcaagtcattttgccaaatgaattcaaagatcagtttaagagtagagttgctgagaacactactttta |
124815 |
T |
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| Q |
201 |
ctctgcaaaactttgatgttgagaaaaatgagatgaccatcaaagcaactaatcataagtt |
261 |
Q |
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| T |
124814 |
ctctgcaaaactttgatgttgagaaaaatgagatgaccatcaaagcaactaatcataagtt |
124754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 115 - 256
Target Start/End: Complemental strand, 23700063 - 23699922
Alignment:
| Q |
115 |
ttttcagggtgatcgtattcaagtcattttgccaaatgaattcaaagatcagtttaagagtagagttgctgagaacactacttttactctgcaaaacttt |
214 |
Q |
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||||||||||||||| |||||||| |||||||||| ||||||||||||| |||||||||||||| ||||||||||| ||||||| ||||||||| ||||| |
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| T |
23700063 |
ttttcagggtgatcgaattcaagtaattttgccaactgaattcaaagataagtttaagagtagaattgctgagaacgctactttcactctgcaagacttt |
23699964 |
T |
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| Q |
215 |
gatgttgagaaaaatgagatgaccatcaaagcaactaatcat |
256 |
Q |
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| T |
23699963 |
gaggtagagaaaaatgatatgaccatcaaagtaactgatcat |
23699922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 118 - 256
Target Start/End: Complemental strand, 22079763 - 22079625
Alignment:
| Q |
118 |
tcagggtgatcgtattcaagtcattttgccaaatgaattcaaagatcagtttaagagtagagttgctgagaacactacttttactctgcaaaactttgat |
217 |
Q |
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||||| ||||||||||||| | ||| ||||| |||| ||||||||||||||||| ||||| ||| |||||||||||| ||||||||||||||||||||| |
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| T |
22079763 |
tcaggttgatcgtattcaaataattctgccatttgaactcaaagatcagtttaagggtagaattgttgagaacactacctttactctgcaaaactttgat |
22079664 |
T |
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| Q |
218 |
gttgagaaaaatgagatgaccatcaaagcaactaatcat |
256 |
Q |
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| T |
22079663 |
gtcgagaaaaatgaaatgagtataaaagcaactgatcat |
22079625 |
T |
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