View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9211_low_3 (Length: 619)
Name: NF9211_low_3
Description: NF9211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9211_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 567; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 19 - 605
Target Start/End: Complemental strand, 9546433 - 9545847
Alignment:
| Q |
19 |
agaaatacggttggaatgagctagcaaaagagaagggaaagccgttatggaaactagtgttagaacagtttgatgacatgttggtgaagatacttttggc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9546433 |
agaaatacggttggaatgagctagcaaaagagaagggaaagccgttatggaaactagtgttagaacaatttgatgacatgttggtgaagatacttttggc |
9546334 |
T |
|
| Q |
119 |
agcagcctttatatcatttcttttggcatactttgaaggaagtgaatctggattcgaggcttatgtagagccgctcgtgatcattttaatcttagtactt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9546333 |
agcagcctttatatcatttcttttggcatactttgaaggaagtgaatctggattcgaggcttatgtagagccgctcgtgatcattttaatcttagtactt |
9546234 |
T |
|
| Q |
219 |
aacgcaattgtcggagtttggcaagagaacaatgctgagaaggctcttgaggctcttaaagagttgcaatgtgaatctataaaagtgttaagggatggat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9546233 |
aacgcaattgtcggagtttggcaagagaacaatgctgaaaaggctcttgaggctcttaaagagttgcaatgtgaatctataaaagtgttaagggatggat |
9546134 |
T |
|
| Q |
319 |
attttgttcctgatttgcctgcacgggagcttgttccaggcgacattgttgagttgcgagttggagataaagtcccggctgacatgagagttgcagcttt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9546133 |
attttgttcctgatttgcctgcacgggagcttgttccaggcgacattgttgagttgcgcgttggagataaagtcccggccgacatgagagttgcagcttt |
9546034 |
T |
|
| Q |
419 |
gaaaacatcaacactgagattggaacaaagctcgttaaccggagaagcaatgccagttctcaaaggaaccaatcctattttcatggatgattgtgaattg |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9546033 |
gaaaacatcaacactgagattggaacaaagctcgttaaccggagaagcaatgccggttctcaaaggaaccaatcctattttcatggatgattgtgaattg |
9545934 |
T |
|
| Q |
519 |
caggccaaagaaaatatggtatttgcaggcacaactgttgtcaatggaagctgtatttgcattgttattaccacggcaatgaacacc |
605 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9545933 |
caggccaaagaaaatatggtatttgcaggcacaactgttgtcaatggaagctgtatttgcattgttattaccacggcaatgaacacc |
9545847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University