View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9211_low_5 (Length: 342)
Name: NF9211_low_5
Description: NF9211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9211_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 47049009 - 47049327
Alignment:
| Q |
18 |
agattaaaagttttgaaagaaagcataccaagtaaggtaacaaggtcatgatcatttagacctttggcagcaaatttttgtctatggacagaaacaggtt |
117 |
Q |
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| T |
47049009 |
agattaaaagttttgaaagaaagcataccaagtaaggtaacaaggtcatgatcatttagacctttggcagcaaatttttgtcgatggacagaaacaggtt |
47049108 |
T |
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| Q |
118 |
caagcggagaaggcaagtttgaggcttgagatgataaagaaatccttccatcttttcttcctgtgggcaccggccaacttgggccatcactctgtcatat |
217 |
Q |
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| T |
47049109 |
caagcggagaaggcaagtttgaggcttgagatgataaagaaatccttccatcttttcttcctgtgggcactggccaacttgggccatcactctgtcatat |
47049208 |
T |
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| Q |
218 |
tcacgaatcaaacgtgttaattttatcatggttacttcaaaaacaaaatgtattgtgtgtgcgcgcgcgcgtggagtagagtgagtttgactaagtttta |
317 |
Q |
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| T |
47049209 |
tcacgaatcacacgtgttaattttatcatggttacttcaaaaacaaaatgtattgtgcgggcgcgcgcgcgtggagtagagtgagtttgactaagtttta |
47049308 |
T |
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| Q |
318 |
agattgctttaacaccaaa |
336 |
Q |
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| T |
47049309 |
agattgctttaataccaaa |
47049327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 237 - 336
Target Start/End: Original strand, 47052429 - 47052528
Alignment:
| Q |
237 |
attttatcatggttacttcaaaaacaaaatgtattgtgtgtgcgcgcgcgcgtggagtagagtgagtttgactaagttttaagattgctttaacaccaaa |
336 |
Q |
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| T |
47052429 |
attttatcatggttccttcaaaaacacaatgtattgtgtgtgagcgcgcgtgtgtggtagagtgagtttgagtaagttttaagattgctttaataccaaa |
47052528 |
T |
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