View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9211_low_9 (Length: 273)
Name: NF9211_low_9
Description: NF9211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9211_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 256
Target Start/End: Complemental strand, 54789857 - 54789613
Alignment:
| Q |
12 |
ataatactatacaaataaaagaccttataataccctagttcctatcacaaaaatgcagagctaagaataggaagaaaaaatacagatagagaaataatac |
111 |
Q |
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| T |
54789857 |
ataataatatacaaataaaagaccttataataccctagttcctatcacaaaaatgcagagctaagaataggaagaaaaaatacagatagagaaataatac |
54789758 |
T |
|
| Q |
112 |
tatttaaactttcacacataggtattcaactaaaaatcacatatctccaaattaacataacccctgacataaaataaaatgaaaaacgcagttgttaccg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
54789757 |
tatttaaactttcacacataggtattcaactaaaaatcacatatctccaaattaacatatcccctgacataaaataaaatgaaaaacgcagttgttaccg |
54789658 |
T |
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| Q |
212 |
atcctgcacaatgcagcatttatttcaagttcatgaagttcaagt |
256 |
Q |
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| T |
54789657 |
atcctgcacaatgcagcatttatttcaagttcatgaagttcaagt |
54789613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 12 - 186
Target Start/End: Complemental strand, 52282487 - 52282320
Alignment:
| Q |
12 |
ataatactatacaaataaaagaccttataataccctagttcctatcacaaaaatgcagagctaagaataggaagaaaaaatacagatagagaaataatac |
111 |
Q |
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| T |
52282487 |
ataataatatacaaataaaagaccttataataccctagttgctatcacaaaaatgcagagctaggaatgg---gaaaataaacggatagaaaaataataa |
52282391 |
T |
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| Q |
112 |
tatttaaactttcacacataggtattcaactaaaaatcacatatctccaaattaacataacccctgacataaaat |
186 |
Q |
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| T |
52282390 |
catttaaacttt----cataggtattcaactaaaaatcacatatctccaaaataacataacctctgacataaaat |
52282320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 54779309 - 54779375
Alignment:
| Q |
19 |
tatacaaataaaagaccttataataccctagttcctatcacaaaaatgcagagctaagaataggaag |
85 |
Q |
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| T |
54779309 |
tatacaaataaaagaccttataatactctagttcctatcacaaaaatgcagagctaagaatgggaag |
54779375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 54782128 - 54782173
Alignment:
| Q |
203 |
ttgttaccgatcctgcacaatgcagcatttatttcaagttcatgaa |
248 |
Q |
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| T |
54782128 |
ttgttactgatcctgcacaatgcagcatttatttcaagttcatgaa |
54782173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 147
Target Start/End: Original strand, 54779391 - 54779425
Alignment:
| Q |
113 |
atttaaactttcacacataggtattcaactaaaaa |
147 |
Q |
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| T |
54779391 |
atttaaactttcacacataggtattcaactaaaaa |
54779425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 54782019 - 54782064
Alignment:
| Q |
139 |
aactaaaaatcacatatctccaaattaacataacccctgacataaaa |
185 |
Q |
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||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
54782019 |
aactaaaaaccacatatctccaaattaacataa-ccctgacataaaa |
54782064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 52282258 - 52282207
Alignment:
| Q |
203 |
ttgttaccgatcctgcacaatgcagcatttatttcaagttcatgaagttcaa |
254 |
Q |
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||||| ||| || |||||||||||| ||||| |||||||||||||||||||| |
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| T |
52282258 |
ttgttgccgttcatgcacaatgcagaatttacttcaagttcatgaagttcaa |
52282207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 256
Target Start/End: Complemental strand, 19295898 - 19295654
Alignment:
| Q |
12 |
ataatactatacaaataaaagaccttataataccctagttcctatcacaaaaatgcagagctaagaataggaagaaaaaatacagatagagaaataatac |
111 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19295898 |
ataataatatacaaataaaagaccttataataccctagttcctatcacaaaaatgcagagctaagaataggaagaaaaaatacagatagagaaataatac |
19295799 |
T |
|
| Q |
112 |
tatttaaactttcacacataggtattcaactaaaaatcacatatctccaaattaacataacccctgacataaaataaaatgaaaaacgcagttgttaccg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
19295798 |
tatttaaactttcacacataggtattcaactaaaaatcacatatctccaaattaacatatcccctgacataaaataaaatagaaaacgcagttgttaccg |
19295699 |
T |
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| Q |
212 |
atcctgcacaatgcagcatttatttcaagttcatgaagttcaagt |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19295698 |
atcctgcacaatgcagcatttatttcaagttcatgaagttcaagt |
19295654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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