View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9213_high_4 (Length: 238)
Name: NF9213_high_4
Description: NF9213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9213_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 48018420 - 48018608
Alignment:
| Q |
1 |
aatataaaatcaaatgcaatgnnnnnnngagaaaaagatgatgaaatgctaaccgtccagtaagtaaataatctgggtctgctgtcaccataaagctccg |
100 |
Q |
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| T |
48018420 |
aatataaaatcaaatgcaatggaaaaaagagaaaaagatgatgaaatgctaaccgtccagtaagtaaataatctgggtctgctgtcaccataaagctccg |
48018519 |
T |
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| Q |
101 |
gactgacctaactagtgcaattatcaaaagcttcagaataatg----nnnnnnnnatttgaatttcttcatatcgaataatgtttcttc |
185 |
Q |
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| T |
48018520 |
gactgacctaactagtgcaattatcaaaagcttcagaataatgtttttttttttaatttgaatttcttcatatcgaataatgtttcttc |
48018608 |
T |
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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 35408728 - 35408657
Alignment:
| Q |
43 |
gaaatgctaaccgtccagtaagtaaataatctgggtctgctgtcaccataaagctccggactgacctaacta |
114 |
Q |
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| T |
35408728 |
gaaatcctgaccgtccaatacgtgaataatctgggtctgttgtcaccataaagctccggactgacctgacta |
35408657 |
T |
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