View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9213_low_1 (Length: 585)
Name: NF9213_low_1
Description: NF9213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9213_low_1 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 189 - 585
Target Start/End: Complemental strand, 44639548 - 44639153
Alignment:
| Q |
189 |
agtagtgttcacattacaatatgacattgaaaccaacctcttggaggttttttcccatgcactgtgtgcattctgagaaatgtggacttattcctcatgg |
288 |
Q |
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| T |
44639548 |
agtagtgttcacattacaatatgacattgaaaccaacctcttggaggttttt-cccaagcactgtgtgcattctgagaaatgtggacttattcctcatgg |
44639450 |
T |
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| Q |
289 |
ttctgctttggctgataaatcgtcgatctttctctacttcatgaagtatgaaattgatttttatattttcgagtaaaattcaatttacctccaaaattaa |
388 |
Q |
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| T |
44639449 |
ttctgctttggctgataaatcgtcgatctttctctacttcatgaagtatgaaattgatttttatattttcgagtaaaattcaatttacctccaaaattag |
44639350 |
T |
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| Q |
389 |
ttctaacttaagattgagatttgaaacttttgcctctaaaattgaactttagcatcaaattcattgttaaattcattttatgtaagagattagcatggtt |
488 |
Q |
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| T |
44639349 |
ttctaacttaagattgagatttgaaacttttgcctctaaaattgaactttagcatcaaattcattgttaaattcactttacgtaagagattagtatggtt |
44639250 |
T |
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| Q |
489 |
ttaaaaacctcttgtttatttgtcgacaaaattagccatctccgaaagttatttaagaaggaa-gaaaattgtctagtgtatacttctggacaacccg |
585 |
Q |
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| T |
44639249 |
ttaaaaacctcttgtttatttgttg-caaaattatccatctccgaaagttatttaagaaggaaggaaaattgtctagtgtatacttctggacaacccg |
44639153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 44639745 - 44639574
Alignment:
| Q |
17 |
aaaactaaccaaaatatttgtactatttgatggcatatgaaccaaattcatataggtcctcctcctcttactaaaatatgatggcatacacaaccagctg |
116 |
Q |
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| T |
44639745 |
aaaactaaccaaaatatttgtactatttgatggcatatgaaccaaattcatataggtcctcctgctcttactaaaatatgatggcatacacaaccagctg |
44639646 |
T |
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| Q |
117 |
taagtctagctcaaacctagtggtgaaagctctcacaaaaattgaactaaggcggcatcctaattcctacac |
188 |
Q |
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| T |
44639645 |
taagtctagctcaaacctagtggtgaaagctctcacaaaaattgaactaaggcggcatcctaattcctacac |
44639574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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