View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9213_low_3 (Length: 501)

Name: NF9213_low_3
Description: NF9213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9213_low_3
NF9213_low_3
[»] chr4 (7 HSPs)
chr4 (117-494)||(54789931-54790308)
chr4 (117-492)||(54778839-54779216)
chr4 (117-494)||(52282585-52282970)
chr4 (50-111)||(18923014-18923076)
chr4 (37-107)||(44474923-44474994)
chr4 (37-79)||(2178059-2178101)
chr4 (30-58)||(18923082-18923110)
[»] chr8 (2 HSPs)
chr8 (117-294)||(19295972-19296149)
chr8 (30-112)||(37952677-37952759)
[»] chr5 (5 HSPs)
chr5 (30-113)||(14830360-14830443)
chr5 (37-107)||(984887-984958)
chr5 (50-111)||(28739991-28740053)
chr5 (37-116)||(26414665-26414745)
chr5 (37-107)||(21175797-21175870)
[»] chr2 (4 HSPs)
chr2 (1-111)||(12209779-12209884)
chr2 (30-110)||(35608564-35608647)
chr2 (1-90)||(42926397-42926483)
chr2 (37-79)||(9197525-9197567)
[»] chr7 (3 HSPs)
chr7 (1-91)||(21976207-21976292)
chr7 (50-112)||(7559995-7560058)
chr7 (37-84)||(43427809-43427858)
[»] chr6 (2 HSPs)
chr6 (30-92)||(6956138-6956198)
chr6 (66-111)||(23059439-23059484)
[»] chr1 (5 HSPs)
chr1 (67-111)||(48976051-48976095)
chr1 (37-107)||(32240741-32240812)
chr1 (65-112)||(23999129-23999176)
chr1 (37-107)||(43535836-43535906)
chr1 (37-78)||(52456290-52456331)
[»] chr3 (2 HSPs)
chr3 (37-107)||(49138213-49138284)
chr3 (130-166)||(21768622-21768658)


Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 117 - 494
Target Start/End: Original strand, 54789931 - 54790308
Alignment:
Q  117 ctaacacgacattgacacatgtggttacgttcaaataattcatgttctcattatgtgtctatgttgtgtcaagtgtctgtcagtgtttcatagctttctt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  54789931 ctaacacgacattgacacatgtggttacgttcaaataattcatgttctcattatgtgtctatgttgtgtcaagtgtctgttagtgtttcatagctttctt 54790030  T
Q  217 tcaattagtagcagactgtattctaacaatttttagttatttagttgtgtgtggtttttcttttgcgagagtgcatgttattgaatctatatttttaata 316  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  54790031 tcaattatttgcagactgtattctaacaatttttagttatttagttgtgtgtggtttttcttttgcgagagtgcatgtcattgaatctatatttttaata 54790130  T
Q  317 agtagtgcattttgatgtaactctgcttcatgcatggctgtagttttccttatatgttctgaatttgtatttctaaactgtgcacaatgcatgttatgca 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  54790131 agtagtgcattttgatgtaactctgcttcatgcatggctgtagttttccttatatgttctgaatttgtatttgtaaactgtgcacaatgcatgttatgca 54790230  T
Q  417 cttatgcagtttgttttgctttggggaatatcttattcttttttctaattgcatcatatatatctctgatgtccatct 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  54790231 cttatgcagtttgttttgctttggggaatatcttattcttttttctaattgcatcatatatatctctcatgtccatct 54790308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 117 - 492
Target Start/End: Complemental strand, 54779216 - 54778839
Alignment:
Q  117 ctaacacgacattgacacatgtggttacgttcaaataattcatgttctcattatgtgtctatgttgtgtcaagtgtc--tgtcagtgtttcatagctttc 214  Q
    |||||| |||| ||||||||||| ||||||||||||||||||| ||||||| ||||||||||||  |||  ||||||  |||||||||||||||||||||    
T  54779216 ctaacatgacactgacacatgtgattacgttcaaataattcattttctcatgatgtgtctatgtcatgtgcagtgtcagtgtcagtgtttcatagctttc 54779117  T
Q  215 tttcaattagtagcagactgtattctaacaatttttagttatttagttgtgtgtggtttttcttttgcgagagtgcatgttattgaatctatatttttaa 314  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  54779116 tttcaattactagcagactgttttctaacaatttttagttatttagttgtgtgtggtatttcttttgggagagtgcatgttattgaatctatatttttaa 54779017  T
Q  315 taagtagtgcattttgatgtaactctgcttcatgcatggctgtagttttccttatatgttctgaatttgtatttctaaactgtgcacaatgcatgttatg 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  54779016 taagtagtgcattttgatgtaactctgcttcatgcatggctgtagttttccttatatgttctgaatttgtatttgtaaactgtgcacaatgcatgttatg 54778917  T
Q  415 cacttatgcagtttgttttgctttggggaatatcttattcttttttctaattgcatcatatatatctctgatgtccat 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  54778916 cacttatgcagtttgttttgctttggggaatatcttattcttttttctaattgcatcatatatatctctcatgtccat 54778839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 117 - 494
Target Start/End: Original strand, 52282585 - 52282970
Alignment:
Q  117 ctaacacgacattgacacatgtggttacgttcaaataattcatgttctc-attatgtgtctatgttgtgtcaagtgtct--gtcagtgtttcatagcttt 213  Q
    ||||||||| | ||||||||||| ||| || |||||||||| |  |||| || | |||||||||| ||||| ||||| |  |||||||||||||||||||    
T  52282585 ctaacacgaaactgacacatgtgattatgtacaaataattcgttctctccatgacgtgtctatgtcgtgtccagtgtttatgtcagtgtttcatagcttt 52282684  T
Q  214 ctttcaattagtagcagactgtattctaacaatttttagttatttagttgtgtgtggtttttcttttgcgag---agtgcatgttattgaatctatattt 310  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||   ||||||||||| |||||||||||||    
T  52282685 ctttcaattagaagcagactgtattttaacaatttttagttatttagttgtgtgtggtttttcttttgggaggagagtgcatgttactgaatctatattt 52282784  T
Q  311 ttaataagtagtgcattttgatgtaactctgcttcatgcatggctgtagttttccttatatgttctgaatttgtatttctaaactgtgcacaatgcatgt 410  Q
    ||||||||||| |||    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||    
T  52282785 ttaataagtagcgcac---gatgtatctctgcttcatgcatggctgtagttttccttatatgttctgaatttgtatttgtatattgtgcacaatgcatgt 52282881  T
Q  411 tatgcacttatgc-----agtttgttttgctttggggaatatcttattcttttttctaattgcatcatatatatctctgatgtccatct 494  Q
    |||||||||||||     ||||||||||||| ||||| |||||||||||||||| ||||||||||||| ||||||||| ||||| ||||    
T  52282882 tatgcacttatgcagtttagtttgttttgctctgggggatatcttattctttttcctaattgcatcatgtatatctctcatgtctatct 52282970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 18923076 - 18923014
Alignment:
Q  50 atatatatagaaaagttggggg-taccatggcacctgcaggtccctatgaagatccgccactg 111  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  18923076 atatatatagaaaagttggggggtaccatggcacctgcaggtccctatgaagttccgccactg 18923014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 44474994 - 44474923
Alignment:
Q  37 tatgcctaatctaatatatatagaaaagttggggg-taccatggcacctgcaggtccctatgaagatccgcc 107  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||  ||||| | |||||||||||    
T  44474994 tatgcctaatctaatatatatagaaaacttgggggttaccatggcacctgcctgtcccaaggaagatccgcc 44474923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 2178059 - 2178101
Alignment:
Q  37 tatgcctaatctaatatatatagaaaagttgggggtaccatgg 79  Q
    |||||||||||||||||||||||||||  ||||||||||||||    
T  2178059 tatgcctaatctaatatatatagaaaatctgggggtaccatgg 2178101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 18923110 - 18923082
Alignment:
Q  30 atacaagtatgcctaatctaatatatata 58  Q
    |||||||||||||||||||||||||||||    
T  18923110 atacaagtatgcctaatctaatatatata 18923082  T

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Target: chr8 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 117 - 294
Target Start/End: Original strand, 19295972 - 19296149
Alignment:
Q  117 ctaacacgacattgacacatgtggttacgttcaaataattcatgttctcattatgtgtctatgttgtgtcaagtgtctgtcagtgtttcatagctttctt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19295972 ctaacacgacattgacacatgtggttacgttcaaataattcatgttctcattatgtgtctatgttgtgtcaagtgtctgttagtgtttcatagctttctt 19296071  T
Q  217 tcaattagtagcagactgtattctaacaatttttagttatttagttgtgtgtggtttttcttttgcgagagtgcatgt 294  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19296072 tcaattatttgcagactgtattctaacaatttttagttatttagttgtgtgtggtttttcttttgcgagagtgcatgt 19296149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 37952759 - 37952677
Alignment:
Q  30 atacaagtatgcctaatctaatatatatagaaaagttgggggtaccatggcacctgcaggtccctatgaagatccgccactgg 112  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  37952759 atacaattatgcctaatctaatatatatagaaaagttgggggtaccatggcacatgcaggtccctgtgaagatccgccactgg 37952677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 14830360 - 14830443
Alignment:
Q  30 atacaagtatgcctaatctaatatatatagaaaagttgggggtaccatggcacctgcaggtccctatgaagatccgccactggg 113  Q
    |||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14830360 atacaattatgcctaatctaatatatgtggaaaagttgggggtaccatggcacctgcaggtccctatgaagattcgccactggg 14830443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 984958 - 984887
Alignment:
Q  37 tatgcctaatctaatatatatagaaaagtt-gggggtaccatggcacctgcaggtccctatgaagatccgcc 107  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||  ||||| | |||||||||||    
T  984958 tatgcctaatctaatatatatagaaaacttggggggtaccatggcacctgcctgtcccaaggaagatccgcc 984887  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 28739991 - 28740053
Alignment:
Q  50 atatatatagaaaagttgggg-gtaccatggcacctgcaggtccctatgaagatccgccactg 111  Q
    |||||||||| ||| |||||| |||||||||||||||||||||||||||||||| ||||||||    
T  28739991 atatatatagcaaaattggggggtaccatggcacctgcaggtccctatgaagatgcgccactg 28740053  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 37 - 116
Target Start/End: Original strand, 26414665 - 26414745
Alignment:
Q  37 tatgcctaatctaatatatatagaaaagtt-gggggtaccatggcacctgcaggtccctatgaagatccgccactgggtgt 116  Q
    |||||||||| |||||||||||||||| || ||||||||||||||||||||  ||||| | ||||||||||| ||| ||||    
T  26414665 tatgcctaatttaatatatatagaaaacttggggggtaccatggcacctgcctgtcccaaggaagatccgcccctgagtgt 26414745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 21175797 - 21175870
Alignment:
Q  37 tatgcctaatcta--atatatatagaaaagtt-gggggtaccatggcacctgcaggtccctatgaagatccgcc 107  Q
    |||||||||||||  |||||||||||||| || |||||||||||||||||| |  ||||| | |||||||||||    
T  21175797 tatgcctaatctaatatatatatagaaaacttggggggtaccatggcacctacctgtcccaaggaagatccgcc 21175870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 12209884 - 12209779
Alignment:
Q  1 cactgcaccaactacgtagttgtgttataatacaagtatgcctaatctaatatatatagaaaagttgggggtaccatggcacctgcaggtccctatgaag 100  Q
    ||||||||||||| ||||||||||     |||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||| ||||||||    
T  12209884 cactgcaccaactgcgtagttgtg-----atacaagtatgcctaatcgaatatatatagaaaagttgggggtatcatggcatctgcaggtctctatgaag 12209790  T
Q  101 atccgccactg 111  Q
    ||| |||||||    
T  12209789 atctgccactg 12209779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 35608564 - 35608647
Alignment:
Q  30 atacaagtatgcctaatctaatatatatagaaaagttgggggt---accatggcacctgcaggtccctatgaagatccgccact 110  Q
    |||||| ||||||||||||||||||||||||||| ||||||||   |||||||||||||||||| ||| |||||||||||||||    
T  35608564 atacaattatgcctaatctaatatatatagaaaatttgggggtaccaccatggcacctgcaggttcctgtgaagatccgccact 35608647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 42926483 - 42926397
Alignment:
Q  1 cactgcaccaactacgtagttgtgttataatacaagtatgcctaatctaatatatatagaaaagtt--gggggtaccatggcacctgcaggt 90  Q
    |||||| |||||||||||||||||     |||||| |||||||||||||||||||||||||| |||  ||||||||||||||||||||||||    
T  42926483 cactgcgccaactacgtagttgtg-----atacaattatgcctaatctaatatatatagaaatgttgggggggtaccatggcacctgcaggt 42926397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 9197525 - 9197567
Alignment:
Q  37 tatgcctaatctaatatatatagaaaagttgggggtaccatgg 79  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  9197525 tatgcctaatctaatatatatagaaaacttgggggtaccatgg 9197567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 21976292 - 21976207
Alignment:
Q  1 cactgcaccaactacgtagttgtgttataatacaagtatgcctaatctaatatatatagaaaagttgggggtaccatggcacctgcaggtc 91  Q
    |||||| |||||||||||||||||     |||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  21976292 cactgcgccaactacgtagttgtg-----atacaaatatgcctaatctaatatatatagagaagttgggggtaccatggcacctgtaggtc 21976207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 7559995 - 7560058
Alignment:
Q  50 atatatatagaaaagttggggg-taccatggcacctgcaggtccctatgaagatccgccactgg 112  Q
    |||||||||||||  ||||||| |||||||||||||||||||||| | ||||||||||||||||    
T  7559995 atatatatagaaaccttgggggataccatggcacctgcaggtcccaaggaagatccgccactgg 7560058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 84
Target Start/End: Complemental strand, 43427858 - 43427809
Alignment:
Q  37 tatgcctaatctaatatatata--gaaaagttgggggtaccatggcacct 84  Q
    ||||||||||||||||||||||  ||||| ||||||||||||||||||||    
T  43427858 tatgcctaatctaatatatatatagaaaacttgggggtaccatggcacct 43427809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 6956198 - 6956138
Alignment:
Q  30 atacaagtatgcctaatctaatatatatagaaaagttgggggtaccatggcacctgcaggtcc 92  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  6956198 atacaagtatgcctaatctaatatata--gaaaagttgggggtaccatggcacctgcaggtcc 6956138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 23059439 - 23059484
Alignment:
Q  66 tgggggtaccatggcacctgcaggtccctatgaagatccgccactg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  23059439 tgggggtaccatggcacctgcaggtccctatgaagatccgccactg 23059484  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 48976051 - 48976095
Alignment:
Q  67 gggggtaccatggcacctgcaggtccctatgaagatccgccactg 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  48976051 gggggtaccatggcacctgcaggtccctatgaagatccgccactg 48976095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 32240812 - 32240741
Alignment:
Q  37 tatgcctaatctaatatatatagaaaagtt-gggggtaccatggcacctgcaggtccctatgaagatccgcc 107  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||  ||||| | |||||||||||    
T  32240812 tatgcctaatctaatatatatagaaaacttggggggtaccatggcacctgcctgtcccaaggaagatccgcc 32240741  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 112
Target Start/End: Complemental strand, 23999176 - 23999129
Alignment:
Q  65 ttgggggtaccatggcacctgcaggtccctatgaagatccgccactgg 112  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||    
T  23999176 ttgggggtaccatggctcctgcaggtccttatgaagatccgccactgg 23999129  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 43535836 - 43535906
Alignment:
Q  37 tatgcctaatctaatatatatagaaaagttgggggtaccatggcacctgcaggtccctatgaagatccgcc 107  Q
    ||||||||||||||||||||||||||| || ||||||||||| |||||||  || || | |||||||||||    
T  43535836 tatgcctaatctaatatatatagaaaactttggggtaccatgacacctgccagtaccaaggaagatccgcc 43535906  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 52456290 - 52456331
Alignment:
Q  37 tatgcctaatctaatatatatagaaaagttgggggtaccatg 78  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  52456290 tatgcctaatctaatatatatagaaaacttgggggtaccatg 52456331  T

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Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 49138213 - 49138284
Alignment:
Q  37 tatgcctaatctaatatatatagaaaagtt-gggggtaccatggcacctgcaggtccctatgaagatccgcc 107  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||  ||||| | |||||||||||    
T  49138213 tatgcctaatctaatatatatagaaaacttggggggtaccatggcacctgcctgtcccaaggaagatccgcc 49138284  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 21768658 - 21768622
Alignment:
Q  130 gacacatgtggttacgttcaaataattcatgttctca 166  Q
    |||||||||||||||||||||||||||||| ||||||    
T  21768658 gacacatgtggttacgttcaaataattcattttctca 21768622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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