View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9213_low_4 (Length: 428)

Name: NF9213_low_4
Description: NF9213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9213_low_4
NF9213_low_4
[»] chr1 (6 HSPs)
chr1 (15-293)||(50401896-50402165)
chr1 (357-428)||(50402176-50402247)
chr1 (305-383)||(11344458-11344535)
chr1 (305-383)||(11502478-11502555)
chr1 (305-354)||(16182246-16182295)
chr1 (305-383)||(18512548-18512625)
[»] chr3 (10 HSPs)
chr3 (290-383)||(35200575-35200667)
chr3 (310-383)||(34102086-34102158)
chr3 (274-327)||(25994514-25994567)
chr3 (299-383)||(10828490-10828573)
chr3 (290-364)||(17561123-17561196)
chr3 (305-383)||(25883961-25884038)
chr3 (305-383)||(27329905-27329982)
chr3 (305-383)||(41710603-41710680)
chr3 (305-383)||(51879115-51879192)
chr3 (306-383)||(44625199-44625275)
[»] chr2 (2 HSPs)
chr2 (305-383)||(20497168-20497245)
chr2 (305-365)||(15939326-15939386)
[»] chr5 (4 HSPs)
chr5 (305-383)||(4418315-4418392)
chr5 (307-383)||(33909025-33909100)
chr5 (305-383)||(6734712-6734788)
chr5 (265-347)||(42801116-42801198)
[»] chr4 (6 HSPs)
chr4 (305-379)||(30305823-30305896)
chr4 (274-317)||(29269218-29269261)
chr4 (305-383)||(3161042-3161119)
chr4 (305-383)||(23142726-23142803)
chr4 (305-383)||(36099156-36099233)
chr4 (274-364)||(37868509-37868599)
[»] chr7 (4 HSPs)
chr7 (288-365)||(30311845-30311922)
chr7 (305-365)||(37710122-37710182)
chr7 (305-350)||(33765541-33765586)
chr7 (324-364)||(7263018-7263058)
[»] chr8 (4 HSPs)
chr8 (274-354)||(5962840-5962920)
chr8 (305-383)||(14583217-14583294)
chr8 (300-349)||(44615733-44615782)
chr8 (288-364)||(9812997-9813073)
[»] chr6 (2 HSPs)
chr6 (274-337)||(27753640-27753703)
chr6 (305-383)||(32142009-32142086)


Alignment Details
Target: chr1 (Bit Score: 86; Significance: 6e-41; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 15 - 293
Target Start/End: Original strand, 50401896 - 50402165
Alignment:
Q  15 gagaccttaaatctcaagttcgattctggttaatgttaattttagtaggttagtttaattgacttctttaagaaactcttacgtta-cnnnnnnnnnnnn 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||| ||| |||||||||||||||||                  
T  50401896 gagaccttaaatctcaagttcgattctggttaatgttaattttagtaggttagt----ttgactccttaaagaaactcttacgttatttttttttttttt 50401991  T
Q  114 nnnacaatctaacgttacttttcttgacagtaccagaatatgtatgcatcatgtcatacttgctatatttctcaaaaagtgattttacc---nnnnnnnn 210  Q
       |||||||||||||||||||||||||||||||         ||||||| |||||||||||||||| |||||||||||||||||||||               
T  50401992 ttgacaatctaacgttacttttcttgacagtacc---------atgcatcgtgtcatacttgctataattctcaaaaagtgattttaccatttatttttt 50402082  T
Q  211 nnnaacaaatgatttgacataataagaaaataacaattatctaaaaatggcttaatttatttatttttgttaaatactctagt 293  Q
       ||||||||||||||||||||||||||||||||||||  | | ||||||||||||| ||| ||||||| ||||||||||||    
T  50402083 tttaacaaatgatttgacataataagaaaataacaattacgtgagaatggcttaatttttttttttttgtcaaatactctagt 50402165  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 357 - 428
Target Start/End: Original strand, 50402176 - 50402247
Alignment:
Q  357 tacatatatatatgcatttgtccctacgaagatggcttaatttaggctgatttatcgatgatttggtttaat 428  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  50402176 tacacatatatatgcatttgtccctacgaggatggcttaatttaggctgatttatcgatgatttggtttaat 50402247  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 305 - 383
Target Start/End: Complemental strand, 11344535 - 11344458
Alignment:
Q  305 acacattttaaatgtggagaaataaggtgttcgggtttcgaactccagcctctacatatatatatgcatttgtccctac 383  Q
    |||||| || ||||||||||| | |||||| | || |||||||||| |||||||||||||| |||||||||||||||||    
T  11344535 acacatatttaatgtggagaagtgaggtgtccagggttcgaactccggcctctacatatat-tatgcatttgtccctac 11344458  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 305 - 383
Target Start/End: Complemental strand, 11502555 - 11502478
Alignment:
Q  305 acacattttaaatgtggagaaataaggtgttcgggtttcgaactccagcctctacatatatatatgcatttgtccctac 383  Q
    |||||| || ||||||||||| | |||||| | || |||||||||| |||||||||||||| |||||||||||||||||    
T  11502555 acacatatttaatgtggagaagtgaggtgtccagggttcgaactccggcctctacatatat-tatgcatttgtccctac 11502478  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 354
Target Start/End: Complemental strand, 16182295 - 16182246
Alignment:
Q  305 acacattttaaatgtggagaaataaggtgttcgggtttcgaactccagcc 354  Q
    ||||||||||||||||||||| |  |||||||||| ||||||||||||||    
T  16182295 acacattttaaatgtggagaagtggggtgttcgggattcgaactccagcc 16182246  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 383
Target Start/End: Original strand, 18512548 - 18512625
Alignment:
Q  305 acacattttaaatgtggagaaataaggtgttcgggtttcgaactccagcctctacatatatatatgcatttgtccctac 383  Q
    ||||||||||||||||||||| |  ||||| |||| ||||||| || ||| || |||||| | ||||||||||||||||    
T  18512548 acacattttaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcatata-aaatgcatttgtccctac 18512625  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 383
Target Start/End: Complemental strand, 35200667 - 35200575
Alignment:
Q  290 tagtagttagaacttacacattttaaatgtggagaaataaggtgttcgggtttcgaactccagcctctacatatatatatgcatttgtccctac 383  Q
    |||| |||| |||| ||||||||||||||||||||||| |||||| |||| || |||| ||  |||||||||||| | ||||||||||||||||    
T  35200667 tagtggttaaaactcacacattttaaatgtggagaaatgaggtgtccggggtttgaaccccgacctctacatata-aaatgcatttgtccctac 35200575  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 383
Target Start/End: Complemental strand, 34102158 - 34102086
Alignment:
Q  310 ttttaaatgtggagaaataaggtgttcgggtttcgaactccagcctctacatatatatatgcatttgtccctac 383  Q
    |||||||||||||||||| |||||| |||| ||||||| |||||| || |||||| | ||||||||||||||||    
T  34102158 ttttaaatgtggagaaatgaggtgtccggggttcgaaccccagcccctgcatata-aaatgcatttgtccctac 34102086  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 25994514 - 25994567
Alignment:
Q  274 tttttgttaaatactctagtagttagaacttacacattttaaatgtggagaaat 327  Q
    |||||||||| || ||||||||||||| |||||||||||||||| | |||||||    
T  25994514 tttttgttaagtagtctagtagttagagcttacacattttaaatatagagaaat 25994567  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 383
Target Start/End: Complemental strand, 10828573 - 10828490
Alignment:
Q  299 gaacttacacattttaaatgtggagaaataaggtgttcgggtttcgaactccagcctctacatatatatatgcatttgtccctac 383  Q
    ||||| ||||||||| ||||||||||| |  |||||  ||| |||||||||| | |||| |||||| ||||||||||||||||||    
T  10828573 gaactcacacatttttaatgtggagaagtggggtgtctggggttcgaactccggtctctgcatata-atatgcatttgtccctac 10828490  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 364
Target Start/End: Complemental strand, 17561196 - 17561123
Alignment:
Q  290 tagtagttagaacttacacattttaaatgtggagaaataaggtgttcgggtttcgaactccagcctctacatata 364  Q
    |||||| |||| || ||||||||||||||||||||| || ||||||| |  ||||||| || |||||||||||||    
T  17561196 tagtagatagagctcacacattttaaatgtggagaagtatggtgttc-gaattcgaaccccggcctctacatata 17561123  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 383
Target Start/End: Original strand, 25883961 - 25884038
Alignment:
Q  305 acacattttaaatgtggagaaataaggtgttcgggtttcgaactccagcctctacatatatatatgcatttgtccctac 383  Q
    ||||||||||||||||||||| |  ||||| |||| ||||||| ||  || || ||||||| |||||||||||||||||    
T  25883961 acacattttaaatgtggagaagtggggtgtccggggttcgaaccccgacccctgcatatat-tatgcatttgtccctac 25884038  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 383
Target Start/End: Original strand, 27329905 - 27329982
Alignment:
Q  305 acacattttaaatgtggagaaataaggtgttcgggtttcgaactccagcctctacatatatatatgcatttgtccctac 383  Q
    ||||||||||||||||||||| |  ||||| |||| ||||||| || ||| || |||||| | ||||||||||||||||    
T  27329905 acacattttaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcatata-aaatgcatttgtccctac 27329982  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 383
Target Start/End: Complemental strand, 41710680 - 41710603
Alignment:
Q  305 acacattttaaatgtggagaaataaggtgttcgggtttcgaactccagcctctacatatatatatgcatttgtccctac 383  Q
    ||||||||||||||||||||| | |||||| |||| ||||||| || ||| || ||| || | ||||||||||||||||    
T  41710680 acacattttaaatgtggagaagtgaggtgtccgggattcgaaccccggcccctgcatgta-aaatgcatttgtccctac 41710603  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 383
Target Start/End: Complemental strand, 51879192 - 51879115
Alignment:
Q  305 acacattttaaatgtggagaaataaggtgttcgggtttcgaactccagcctctacatatatatatgcatttgtccctac 383  Q
    ||||||||||||||||||||| |  ||||| |||| ||||||| || ||| || |||||| | ||||||||||||||||    
T  51879192 acacattttaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcatata-aaatgcatttgtccctac 51879115  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 383
Target Start/End: Original strand, 44625199 - 44625275
Alignment:
Q  306 cacattttaaatgtggagaaataaggtgttcgggtttcgaactccagcctctacatatatatatgcatttgtccctac 383  Q
    |||||||||||||||||||| |  ||||| |||| ||||||| || ||| || |||||| | ||||||||||||||||    
T  44625199 cacattttaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcatata-aaatgcatttgtccctac 44625275  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 305 - 383
Target Start/End: Original strand, 20497168 - 20497245
Alignment:
Q  305 acacattttaaatgtggagaaataaggtgttcgggtttcgaactccagcctctacatatatatatgcatttgtccctac 383  Q
    ||||||||||||||||||||| |  ||||| |||| ||||||| |||||| ||||||||| | ||||||||||||||||    
T  20497168 acacattttaaatgtggagaagtggggtgtccgggattcgaaccccagcccctacatata-aaatgcatttgtccctac 20497245  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 365
Target Start/End: Complemental strand, 15939386 - 15939326
Alignment:
Q  305 acacattttaaatgtggagaaataaggtgttcgggtttcgaactccagcctctacatatat 365  Q
    ||||||||||||||||||||| |  |||||||||| ||||||| | | ||||| |||||||    
T  15939386 acacattttaaatgtggagaagtggggtgttcggggttcgaaccctaacctctgcatatat 15939326  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 383
Target Start/End: Original strand, 4418315 - 4418392
Alignment:
Q  305 acacattttaaatgtggagaaataaggtgttcgggtttcgaactccagcctctacatatatatatgcatttgtccctac 383  Q
    ||||||||||||||||||||||| |||||| || | ||||||| |||||| || |||||| | |||||||| |||||||    
T  4418315 acacattttaaatgtggagaaatgaggtgtccgaggttcgaaccccagcccctgcatata-aaatgcatttatccctac 4418392  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 383
Target Start/End: Complemental strand, 33909100 - 33909025
Alignment:
Q  307 acattttaaatgtggagaaataaggtgttcgggtttcgaactccagcctctacatatatatatgcatttgtccctac 383  Q
    ||||||||||||||||||| |  ||||| |||| ||||||| ||  |||||||||||| | ||||||||||||||||    
T  33909100 acattttaaatgtggagaagttgggtgtccggggttcgaaccccgacctctacatata-aaatgcatttgtccctac 33909025  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 383
Target Start/End: Original strand, 6734712 - 6734788
Alignment:
Q  305 acacattttaaatgtggagaaataaggtgttcgggtttcgaactccagcctctacatatatatatgcatttgtccctac 383  Q
    ||||||||||||||||||||| |  |||| ||||| ||||||  || ||| |||||||||| |||||||||||||||||    
T  6734712 acacattttaaatgtggagaagtggggtg-tcgggattcgaaacccggcccctacatatat-tatgcatttgtccctac 6734788  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 347
Target Start/End: Complemental strand, 42801198 - 42801116
Alignment:
Q  265 atttatttatttttgttaaatactctagtagttagaacttacacattttaaatgtggagaaataaggtgttcgggtttcgaac 347  Q
    |||||||||||||||| || || ||||||  ||||| || |||||||||||||| | |||| | ||||||||||  |||||||    
T  42801198 atttatttatttttgtcaagtaatctagtgattagatctcacacattttaaatgcgaagaagtgaggtgttcggaattcgaac 42801116  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 379
Target Start/End: Complemental strand, 30305896 - 30305823
Alignment:
Q  305 acacattttaaatgtggagaaataaggtgttcgggtttcgaactccagcctctacatatatatatgcatttgtcc 379  Q
    ||||||||||||||||||||| | |||||| |||| ||||||| |||||| || |||||| | ||||||||||||    
T  30305896 acacattttaaatgtggagaagtgaggtgtccggggttcgaaccccagcccctgcatata-aaatgcatttgtcc 30305823  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 317
Target Start/End: Complemental strand, 29269261 - 29269218
Alignment:
Q  274 tttttgttaaatactctagtagttagaacttacacattttaaat 317  Q
    ||||||| ||||| |||||||||||||||||||||||| |||||    
T  29269261 tttttgtcaaatagtctagtagttagaacttacacattctaaat 29269218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 383
Target Start/End: Complemental strand, 3161119 - 3161042
Alignment:
Q  305 acacattttaaatgtggagaaataaggtgttcgggtttcgaactccagcctctacatatatatatgcatttgtccctac 383  Q
    ||||||||||||||||||||| | | |||| |||| |||||||| |||||  || ||||| | ||||||||||||||||    
T  3161119 acacattttaaatgtggagaagtgaagtgtccgggattcgaactacagcccgtatatata-aaatgcatttgtccctac 3161042  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 383
Target Start/End: Original strand, 23142726 - 23142803
Alignment:
Q  305 acacattttaaatgtggagaaataaggtgttcgggtttcgaactccagcctctacatatatatatgcatttgtccctac 383  Q
    |||||||||||||||||||||||  |  || || | ||||||| |||||| ||||||||| | ||||||||||||||||    
T  23142726 acacattttaaatgtggagaaatgggcggtccgaggttcgaaccccagcccctacatata-aaatgcatttgtccctac 23142803  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 383
Target Start/End: Original strand, 36099156 - 36099233
Alignment:
Q  305 acacattttaaatgtggagaaataaggtgttcgggtttcgaactccagcctctacatatatatatgcatttgtccctac 383  Q
    ||||||||||||||||||||| |  ||||| |||| ||||||| || ||| || |||||| | ||||||||||||||||    
T  36099156 acacattttaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcatata-aaatgcatttgtccctac 36099233  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 364
Target Start/End: Original strand, 37868509 - 37868599
Alignment:
Q  274 tttttgttaaatactctagtagttagaacttacacattttaaatgtggagaaataaggtgttcgggtttcgaactccagcctctacatata 364  Q
    ||||||| ||||| | |||| |||||| || ||||| ||||| ||||||||| | |||||| || | |||||||||||||| || ||||||    
T  37868509 tttttgtcaaatagtttagtggttagagctcacacaatttaattgtggagaagtgaggtgtccgaggttcgaactccagcccctgcatata 37868599  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 365
Target Start/End: Complemental strand, 30311922 - 30311845
Alignment:
Q  288 tctagtagttagaacttacacattttaaatgtggagaaataaggtgttcgggtttcgaactccagcctctacatatat 365  Q
    ||||||||||  | || |||||| ||||||||||| || | || |||| | |||||||||||||||||||||||||||    
T  30311922 tctagtagttgaagctcacacatgttaaatgtggaaaagtgagatgtttgagtttcgaactccagcctctacatatat 30311845  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 365
Target Start/End: Complemental strand, 37710182 - 37710122
Alignment:
Q  305 acacattttaaatgtggagaaataaggtgttcgggtttcgaactccagcctctacatatat 365  Q
    ||||||||||||||||||||| | || |||||| | |||||||||||| | ||||||||||    
T  37710182 acacattttaaatgtggagaagtgagatgttcgtgattcgaactccagtccctacatatat 37710122  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Original strand, 33765541 - 33765586
Alignment:
Q  305 acacattttaaatgtggagaaataaggtgttcgggtttcgaactcc 350  Q
    |||||||| ||||||| ||||||||||||||| || ||||||||||    
T  33765541 acacatttaaaatgtgaagaaataaggtgttcagggttcgaactcc 33765586  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 364
Target Start/End: Original strand, 7263018 - 7263058
Alignment:
Q  324 aaataaggtgttcgggtttcgaactccagcctctacatata 364  Q
    ||||| |||||||||| ||||||||||| ||||||||||||    
T  7263018 aaatagggtgttcggggttcgaactccaacctctacatata 7263058  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 354
Target Start/End: Complemental strand, 5962920 - 5962840
Alignment:
Q  274 tttttgttaaatactctagtagttagaacttacacattttaaatgtggagaaataaggtgttcgggtttcgaactccagcc 354  Q
    |||||||||| || |||||| | |  |||| |||||||||||||||| |||||| |||||| |||| ||||||||| ||||    
T  5962920 tttttgttaagtagtctagtggctgaaactcacacattttaaatgtgaagaaatgaggtgtccggggttcgaactctagcc 5962840  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 383
Target Start/End: Complemental strand, 14583294 - 14583217
Alignment:
Q  305 acacattttaaatgtggagaaataaggtgttcgggtttcgaactccagcctctacatatatatatgcatttgtccctac 383  Q
    |||||| || ||||||||||| |  |||||||| | ||||||| |||||| || ||||||| |||||||||||||||||    
T  14583294 acacatatttaatgtggagaagtggggtgttcgtggttcgaaccccagcccctgcatatat-tatgcatttgtccctac 14583217  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 349
Target Start/End: Complemental strand, 44615782 - 44615733
Alignment:
Q  300 aacttacacattttaaatgtggagaaataaggtgttcgggtttcgaactc 349  Q
    |||| |||||||||||||||| |||||| |||||| |||| |||||||||    
T  44615782 aactcacacattttaaatgtgaagaaatgaggtgtccggggttcgaactc 44615733  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 364
Target Start/End: Original strand, 9812997 - 9813073
Alignment:
Q  288 tctagtagttagaacttacacattttaaatgtggagaaataaggtgttcgggtttcgaactccagcctctacatata 364  Q
    |||||| ||||||||| | ||||||||||||||||||| | ||||||  | | ||||||||||  ||||| ||||||    
T  9812997 tctagtggttagaactcatacattttaaatgtggagaagtgaggtgtctgagattcgaactccgacctctgcatata 9813073  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 337
Target Start/End: Original strand, 27753640 - 27753703
Alignment:
Q  274 tttttgttaaatactctagtagttagaacttacacattttaaatgtggagaaataaggtgttcg 337  Q
    ||||||| || || |||||||| ||||||| ||||||||| |||||| | ||||||||||||||    
T  27753640 tttttgtcaagtagtctagtagatagaactcacacatttttaatgtgaataaataaggtgttcg 27753703  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 383
Target Start/End: Original strand, 32142009 - 32142086
Alignment:
Q  305 acacattttaaatgtggagaaataaggtgttcgggtttcgaactccagcctctacatatatatatgcatttgtccctac 383  Q
    |||||||||||||||||| || |  |||||  ||| ||||||| |||||| ||||||||| | ||||||||||||||||    
T  32142009 acacattttaaatgtggaaaagtggggtgtctggggttcgaaccccagcccctacatata-aaatgcatttgtccctac 32142086  T

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