View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9213_low_8 (Length: 239)
Name: NF9213_low_8
Description: NF9213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9213_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 80 - 222
Target Start/End: Complemental strand, 8946083 - 8945941
Alignment:
| Q |
80 |
tcctgctgattgaaatcgattggtaagtggtaacccttcatttatcttttgttccatatcccaatggaaacttttttcctttcaatttctttttattgct |
179 |
Q |
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| T |
8946083 |
tcctgctgattgaaatcgattgctaagtggtaacccttcatttatcttttgttccatatcccaattgaaacttttttcctttcaatttcattttattgct |
8945984 |
T |
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| Q |
180 |
ttctagatccaacgatgtgttgcatgataatctttattatgtt |
222 |
Q |
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| T |
8945983 |
ttctagatccaacgatgtgttgcatgataatctttattatgtt |
8945941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 8946200 - 8946146
Alignment:
| Q |
22 |
cctcaacatttttgagctctcaatacaatctctttcatcaatcaaaaaccatagc |
76 |
Q |
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| T |
8946200 |
cctcaacatttttgagctctcaatacaatctctttcatcaatcaaaaaccatagc |
8946146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 80 - 223
Target Start/End: Complemental strand, 51857049 - 51856907
Alignment:
| Q |
80 |
tcctgctgattgaaatcgattggtaagtggtaacccttcatttatcttttgttccatatcccaatggaaacttttttcctttcaatttctttttattgct |
179 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
51857049 |
tcctgctgattgaaatcgattggtaagtggtaacccttcatttatcttttgttccatatcccaattgaaacttttttcctttcaa-ttctttttattgct |
51856951 |
T |
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| Q |
180 |
ttctagatccaacgatgtgttgcatgataatctttattatgttt |
223 |
Q |
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| T |
51856950 |
ttctagatccaacgatgcgttgcatgataatctttattatgttt |
51856907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 51857186 - 51857130
Alignment:
| Q |
22 |
cctcaacatttttgagctctcaatacaatctctttcatcaatcaaaaaccatagcgc |
78 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51857186 |
cctcaacatttttgagctctcaatacaatctctttcatcaatcaaaaaccatagcgc |
51857130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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