View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9214_low_1 (Length: 739)
Name: NF9214_low_1
Description: NF9214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9214_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 20 - 537
Target Start/End: Original strand, 2151587 - 2152119
Alignment:
| Q |
20 |
ttgtccaattggaaaggtgaatcatcgtcgatgt------ctatgttttgaatgaaccttcttggtggacaatcattgagatccttgaccaaaattcttt |
113 |
Q |
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| T |
2151587 |
ttgtccaattggaaaggtgaatcatcgtcgatgtctatgtctatgttttgaatgaaccttcttggtggacaatcattgagatccttgaccaaaattcttt |
2151686 |
T |
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| Q |
114 |
gtctctcatgataaatatgtttgacagcaaattctcttccatttgagagtgtaatcaaaggttggttattcttgcaaacaacttcaaatcctgggtacac |
213 |
Q |
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| T |
2151687 |
gtctctcacggtaaatatgtttgacaacaaattctcttccatttgagagtgtaatcaaaggttgcttattcttgcaaacaacttcaaatcctgggtacac |
2151786 |
T |
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| Q |
214 |
acatcgatcactttgagcattgttaatttgattttcttctcttaattggaaagggaactcnnnnnnnngttccgacgagtttccacaatgtctcttgtca |
313 |
Q |
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| T |
2151787 |
acatcgatcactttgagcattgttaatttgattttcttttcttaattggaatgggaactcaaaaaaaagatccgacgagtttccacaatgtctcttgtca |
2151886 |
T |
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| Q |
314 |
caaattggagctgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatgagagt------- |
406 |
Q |
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| T |
2151887 |
cacattggagctgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatgagagtggtgctt |
2151986 |
T |
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| Q |
407 |
--ggtgtgaatcactaaattgaaatattgattgtcaactatgtgagataaaacaaaatctttgtgtaaagcaatgcctactctaatcatagtgttactcg |
504 |
Q |
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| T |
2151987 |
gaggtgtgaatcactaaattgaaatattgattgtcaactatgtgagataaaacaaaatctttgtgtaaagcaatgcctactctaatcatagtgttactcg |
2152086 |
T |
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| Q |
505 |
tccctaatgtgttaatttggattttttatatat |
537 |
Q |
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| T |
2152087 |
tccctaatgtgttaatttggattatatatatat |
2152119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 28 - 270
Target Start/End: Original strand, 2146191 - 2146433
Alignment:
| Q |
28 |
ttggaaaggtgaatcatcgtcgatgtctatgttttgaatgaaccttcttggtggacaatcattgagatccttgaccaaaattctttgtctctcatgataa |
127 |
Q |
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||||||| |||||||||||| || |||||||||||||| ||||||||||||||||||||||||| |||| | | | | |||||||| ||||||| | |
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| T |
2146191 |
ttggaaaagtgaatcatcgttgaggtctatgttttgaaggaaccttcttggtggacaatcattgggatcatccatccatattctttggctctcataggat |
2146290 |
T |
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| Q |
128 |
atatgtttgacagcaaattctcttccatttgagagtgtaatcaaaggttggttattcttgcaaacaacttcaaatcctgggtacacacatcgatcacttt |
227 |
Q |
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| T |
2146291 |
atatttttgataacatattcttttccatttgagagtgtaatcaaaggttgcttatttttgcaaacaacttcaaagcctgggtacacacatcgatcacttt |
2146390 |
T |
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| Q |
228 |
gagcattgttaatttgattttcttctcttaattggaaagggaa |
270 |
Q |
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| T |
2146391 |
gattattgctaatttgattttcttctcttaattggaaagggaa |
2146433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 2142058 - 2142267
Alignment:
| Q |
21 |
tgtccaattggaaaggtgaatcatcgtcgatgtctatgttttgaatgaaccttcttggtggacaatcattgagatccttgaccaaaattctttgtctctc |
120 |
Q |
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||||| |||||||||||||||||| || || ||||||||| || ||||| |||||||| |||| |||| |||| | | | |||||||||| || | |
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| T |
2142058 |
tgtcccattggaaaggtgaatcattgttgaggtctatgttc--aaggaaccgtcttggtgaacaaccattaggatcatccaaccaaattctttgacttgc |
2142155 |
T |
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| Q |
121 |
atgataaatatgtttgacagcaaattctcttccatttgagagtgtaatcaaaggttggt---tattcttgcaaacaacttcaaatcctgggtacacacat |
217 |
Q |
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| T |
2142156 |
atgggaaaattttttgacaataaattctcttccatttgagagtgtaatcaaaggttggttcatattgttgcaataaacttcaaatcctgggtacccacat |
2142255 |
T |
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| Q |
218 |
cgatcactttga |
229 |
Q |
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| T |
2142256 |
cgatcactttga |
2142267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 313 - 402
Target Start/End: Original strand, 2142340 - 2142429
Alignment:
| Q |
313 |
acaaattggagctgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatga |
402 |
Q |
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| T |
2142340 |
acaaattggagctctgcttcttgttgagtgaaaaagcaagaggactatggaaaatatgaaagaaattttcatggtagccattagatatga |
2142429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 320 - 406
Target Start/End: Original strand, 2146513 - 2146599
Alignment:
| Q |
320 |
ggagctgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatgagagt |
406 |
Q |
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|||| ||||||||||||||||||||||||||||| | ||||| |||| ||| ||||| |||||||||||||||| |||||||| |
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| T |
2146513 |
ggagttgtgctttttgttgagtgaaaaagcaagagaactatggaaaatatgaatgaaattctcaaggtagccattagtaatgagagt |
2146599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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