View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9214_low_2 (Length: 582)
Name: NF9214_low_2
Description: NF9214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9214_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 392
Target Start/End: Original strand, 14369243 - 14369620
Alignment:
| Q |
19 |
gaaagacaacaaagaaaacatcttctaattctatcagagacttt-----gatcaagatttttaatgtttctattcaccaccctaaagcaccgattatcaa |
113 |
Q |
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| T |
14369243 |
gaaacacaacaaagaaaacatcttctaattcaatcagagactttaccctgatcaagaattttaatgtttctgttcaccaccctagagcaccgattatcaa |
14369342 |
T |
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| Q |
114 |
agaggtgatgtggcatcctcctctccaatcctggattaaatgtaacatagatggtgctgcctacggcaaccctagtttatcagctgctggagatgtcttt |
213 |
Q |
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| T |
14369343 |
agaggtgatgtggcaccctcctctccattcctg-atcaaatgtaacatagatggtgctgccaagggaaaccctggtttatcagctgctggaggtgtcttt |
14369441 |
T |
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| Q |
214 |
agagaccatgagggtcagtttattatgtgtttctctgagcctcttggtatttccacttcttatatttctgaaatgcatggtgcactcagagcaattgaaa |
313 |
Q |
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| T |
14369442 |
agagaccgtgagggtcagtttattctatgtttctctgagccacttggtatttccacttcttatatttctgaaatgcatggtgcattcagagcaattgaaa |
14369541 |
T |
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| Q |
314 |
cagcttttcaaaaaggttggaggaacctttggctagaaacagattcttctttggttgttctagcttttcaaagagatgg |
392 |
Q |
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| T |
14369542 |
tagcttttcaaagaggttggaggaacctatggatagaaacagattctcctttggtggttcttgcttttcaaagagatgg |
14369620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 419 - 472
Target Start/End: Original strand, 14369616 - 14369669
Alignment:
| Q |
419 |
gatggaaaaacatgaagctcattcttcgacaaatgaattgcattgtaactcaca |
472 |
Q |
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| T |
14369616 |
gatggaaaaacatgaagctcattctacgtcaaatgaattgcattgtgactcaca |
14369669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 469 - 548
Target Start/End: Complemental strand, 21818079 - 21818000
Alignment:
| Q |
469 |
cacatatatagagcaggaaatgaggtagcagacactttggtaaattatgggatatctttgcaaaccctaacaatttggga |
548 |
Q |
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| T |
21818079 |
cacatatatagagaaggcaatgatgtagcagacactttggcaaattatgggatatctttgcaaaccctaacattttggga |
21818000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 321 - 391
Target Start/End: Complemental strand, 16009936 - 16009866
Alignment:
| Q |
321 |
tcaaaaaggttggaggaacctttggctagaaacagattcttctttggttgttctagcttttcaaagagatg |
391 |
Q |
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| T |
16009936 |
tcaaagaggttggaggaacctttggatagaaacagattcttctttagtagtattggctttccaaagagatg |
16009866 |
T |
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