View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9215_high_3 (Length: 289)
Name: NF9215_high_3
Description: NF9215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9215_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 5285082 - 5284808
Alignment:
| Q |
1 |
ctaaaaattctctattttt-aagttaaagagtgttaaaacatttttctgataattgaagattgtaaaggatgtctatagcttcatcctctgcacctattt |
99 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5285082 |
ctaaaaattctctattttttaagttaaagagtgttaaaacatttttctgataattgaagattgtaaaggatgtctatagcttcatcctctgcacctattt |
5284983 |
T |
|
| Q |
100 |
tgaactcaaaagcaaaacttcaacttcatcatcgtaaagggtaacttcaaattcaattgtttaacataaatatgaataatgtgttgtttgtcactgtcca |
199 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5284982 |
tgaactcaaaagcaaaacttcaacgtcatcatcgtaaagggtaacttcaaattcaattgtttaacataaatatgaataatgtgttgtttgtcactgtcca |
5284883 |
T |
|
| Q |
200 |
gactat--agagtacaaaatgtgtttaaatactaaggcataattggccgaatctgtgatcaattgttgttttctg |
272 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5284882 |
gactatagagagtacaaaatgtgtttaaatactaaggcataattggccgaatctgtgatcaattgttgttttctg |
5284808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 24899408 - 24899273
Alignment:
| Q |
1 |
ctaaaaattctctattttt-aagttaaagagtgtta--aaacatttttctgataattgaagattgtaaaggatgtctatagcttcatcctctgcacctat |
97 |
Q |
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|||||||||||| |||||| ||||| ||||| ||| |||| || ||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
24899408 |
ctaaaaattctccatttttgaagtttaagagagttttcaaaccttgttctgataattgaagattgtaaaggatgtttatagcttcatcttctgcacctat |
24899309 |
T |
|
| Q |
98 |
tttgaactcaaaagcaaaa-cttcaacttcatcatc |
132 |
Q |
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| T |
24899308 |
tttgaagtcaaaagcaaaaccttcaacatcatcatc |
24899273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 24906867 - 24906732
Alignment:
| Q |
1 |
ctaaaaattctctattttt-aagttaaagagtgtta--aaacatttttctgataattgaagattgtaaaggatgtctatagcttcatcctctgcacctat |
97 |
Q |
| |
|
|||||||||||| |||||| ||||| ||||| ||| |||| || ||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
24906867 |
ctaaaaattctccatttttgaagtttaagagagttttcaaaccttgttctgataattgaagattgtaaaggatgtttatagcttcatcttctgcacctat |
24906768 |
T |
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| Q |
98 |
tttgaactcaaaagcaaaa-cttcaacttcatcatc |
132 |
Q |
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|||||| |||||||||||| ||||||| |||||||| |
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| T |
24906767 |
tttgaagtcaaaagcaaaaccttcaacatcatcatc |
24906732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 24890588 - 24890694
Alignment:
| Q |
27 |
agagtgttaaaacatttttctgataattgaagattgtaaaggatgtctatagcttcatcctctgcacctattttgaactcaaaagcaaaa-cttcaactt |
125 |
Q |
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||||| || |||| || ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||| ||||||| | |
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| T |
24890588 |
agagttttcaaaccttgttctgataattgaagattgtaaaggatgtttatagcttcatcttctgcacctattttgaagtcaaaagcaaaaccttcaacat |
24890687 |
T |
|
| Q |
126 |
catcatc |
132 |
Q |
| |
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||||||| |
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|
| T |
24890688 |
catcatc |
24890694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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