View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9215_low_1 (Length: 551)
Name: NF9215_low_1
Description: NF9215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9215_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 421; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 104 - 536
Target Start/End: Original strand, 32001917 - 32002349
Alignment:
| Q |
104 |
cttaccatatatggtaatgaagagccaataaactttactgcataggtaaatttgaggtatccccgttatgtttaattgcaaccctcttcttctttttctt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32001917 |
cttaccatatatggtaatgaagagccaataaactttactgcataggtaaatttgaggtatccccgttatgtttaattgcaaccctcttcttctttttctt |
32002016 |
T |
|
| Q |
204 |
cttgtaaggaattcctctagccttagcttgagaatctctcacttcacgaagatagattcttatggaaccactagcaaaaggattagattcaggtaatcca |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32002017 |
cttgtaaggaattcctctagccttagcttgagaatctctcacctcacgaagatagattcttatggaaccactagcaaaaggattagtttcaggtaatcca |
32002116 |
T |
|
| Q |
304 |
ccattttcttcataagcagctcttaatcttccaattagtgcatcaagacttccccaagcttgttttagaggacaagtacatggtccaggtggttcggttt |
403 |
Q |
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| T |
32002117 |
ccattttcttcataagcagctcttaatcttccaattagtgcatcaagacttccccaagcttgttttagaggacaagtacatggtccaggtggttcggttt |
32002216 |
T |
|
| Q |
404 |
gtccgaaaaacaaacaaccttgtaagtgcacttttgtttttccaaattgatccaagtaccttaggaattcaagaacatggcttgaattacaatttgatag |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32002217 |
gtccgaaaaacaaacaaccttgtaagtgcacttttgtttttccaaattgatccaagtaccttaggaattcaagaacatggtttgaattacaatttgatag |
32002316 |
T |
|
| Q |
504 |
tgccactggtggtctttgattccttaagtattg |
536 |
Q |
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| T |
32002317 |
tgccactggtggtctttgattccttaagtattg |
32002349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 191 - 473
Target Start/End: Complemental strand, 39556753 - 39556471
Alignment:
| Q |
191 |
tcttctttttcttcttgtaaggaattcctctagccttagcttgagaatctctcacttcacgaagatagattcttatggaaccactagcaaaaggattaga |
290 |
Q |
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|||||||||||||||||||||| || || ||||||||||||||| | || || || || | |||||| | | || | ||| || || |||||||||| |
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| T |
39556753 |
tcttctttttcttcttgtaagggatacccctagccttagcttgacactccctaacctctctaagataaacgcgaatagcaccgctcgcgaaaggattagt |
39556654 |
T |
|
| Q |
291 |
ttcaggtaatccaccattttcttcataagcagctcttaatcttccaattagtgcatcaagacttccccaagcttgttttagaggacaagtacatggtcca |
390 |
Q |
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|| || ||| || ||||| ||||||||||| ||||| || |||||||| |||||||||||||||||||||||| | || ||||| ||||| ||| | |
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| T |
39556653 |
ctctggagttccgccgttttcctcataagcagcccttaacctcccaattagagcatcaagacttccccaagcttgtctaagtggacatgtacaaggtgct |
39556554 |
T |
|
| Q |
391 |
ggtggttcggtttgtccgaaaaacaaacaaccttgtaagtgcacttttgtttttccaaattgatccaagtaccttaggaattc |
473 |
Q |
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| T |
39556553 |
ggtggctctggctgtccataaaacatacaaccttgtaaatgaactttggtttttccaaattgatctaaatacctaagaaattc |
39556471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 299 - 483
Target Start/End: Complemental strand, 4863300 - 4863116
Alignment:
| Q |
299 |
atccaccattttcttcataagcagctcttaatcttccaattagtgcatcaagacttccccaagcttgttttagaggacaagtacatggtccaggtggttc |
398 |
Q |
| |
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||||||| | |||||||||||||||||||| | ||| || |||||||||||||| |||||||||||| | | ||||||||||| ||| | || || || |
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| T |
4863300 |
atccaccgtgttcttcataagcagctcttagccgtccgatgagtgcatcaagactcccccaagcttgtctcaacggacaagtacacggtgccggcggatc |
4863201 |
T |
|
| Q |
399 |
ggtttgtccgaaaaacaaacaaccttgtaagtgcacttttgtttttccaaattgatccaagtaccttaggaattcaagaacatgg |
483 |
Q |
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|| |||||||||||| | ||||| || ||||| || || || |||||||||||||| ||||| | ||||| ||||| |||||| |
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| T |
4863200 |
gggttgtccgaaaaagatgcaaccgtgcaagtgaaccttagtctttccaaattgatctaagtaacgaaggaactcaagcacatgg |
4863116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 193 - 461
Target Start/End: Complemental strand, 30942240 - 30941972
Alignment:
| Q |
193 |
ttctttttcttcttgtaaggaattcctctagccttagcttgagaatctctcacttcacgaagatagattcttatggaaccactagcaaaaggattagatt |
292 |
Q |
| |
|
|||||||||||||| ||||| || |||||||||||||||||||| ||||| | || | ||| |||| | ||||||||||||||||||||||||| | |
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| T |
30942240 |
ttctttttcttcttataaggtatacctctagccttagcttgagactctctaatctccctaaggtagacacgaatggaaccactagcaaaaggattagtat |
30942141 |
T |
|
| Q |
293 |
caggtaatccaccattttcttcataagcagctcttaatcttccaattagtgcatcaagacttccccaagcttgttttagaggacaagtacatggtccagg |
392 |
Q |
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|||| | ||||||||||||||||||||||| |||||||||||||| || ||||| | ||||||||||||||| | |||||||||||||| ||| |||| |
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| T |
30942140 |
caggagacccaccattttcttcataagcagcccttaatcttccaataagagcatctaagcttccccaagcttgtctaagaggacaagtacaaggtgcagg |
30942041 |
T |
|
| Q |
393 |
tggttcggtttgtccgaaaaacaaacaaccttgtaagtgcacttttgtttttccaaattgatccaagta |
461 |
Q |
| |
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|||||| | |||||| |||||| ||||||||||| || || || |||||||||||||| || ||||| |
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| T |
30942040 |
tggttctggttgtccataaaacatacaaccttgtacatgaaccttagtttttccaaattggtctaagta |
30941972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 301 - 395
Target Start/End: Complemental strand, 37975211 - 37975117
Alignment:
| Q |
301 |
ccaccattttcttcataagcagctcttaatcttccaattagtgcatcaagacttccccaagcttgttttagaggacaagtacatggtccaggtgg |
395 |
Q |
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||||| || |||||| ||||||| | ||| || ||||| || |||||||||||||||||||||||||| | |||||||| |||||| || ||||| |
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| T |
37975211 |
ccaccgttctcttcaaaagcagcacgtaacctaccaataagagcatcaagacttccccaagcttgtttcaaaggacaaggacatggacctggtgg |
37975117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 301 - 395
Target Start/End: Original strand, 33672047 - 33672141
Alignment:
| Q |
301 |
ccaccattttcttcataagcagctcttaatcttccaattagtgcatcaagacttccccaagcttgttttagaggacaagtacatggtccaggtgg |
395 |
Q |
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||||||||||||||| |||||||||||| ||||||||| | ||||||||||||||||||||||||| ||||||||||| ||| ||| ||||||| |
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| T |
33672047 |
ccaccattttcttcaaaagcagctcttagtcttccaatcaatgcatcaagacttccccaagcttgtcgtagaggacaaggacaaggtgcaggtgg |
33672141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 365
Target Start/End: Complemental strand, 15970454 - 15970390
Alignment:
| Q |
301 |
ccaccattttcttcataagcagctcttaatcttccaattagtgcatcaagacttccccaagcttg |
365 |
Q |
| |
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|||||||| |||||| |||||||||| | ||| ||||| |||||||||||||| ||||| ||||| |
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|
| T |
15970454 |
ccaccattctcttcaaaagcagctctaagtctcccaataagtgcatcaagactaccccacgcttg |
15970390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 340 - 395
Target Start/End: Complemental strand, 35814715 - 35814660
Alignment:
| Q |
340 |
agtgcatcaagacttccccaagcttgttttagaggacaagtacatggtccaggtgg |
395 |
Q |
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|||||||||||||||||||||||||| || |||||||||| ||| ||| ||||||| |
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|
| T |
35814715 |
agtgcatcaagacttccccaagcttgcttgagaggacaagcacaaggtgcaggtgg |
35814660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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