View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9215_low_6 (Length: 381)
Name: NF9215_low_6
Description: NF9215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9215_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 338
Target Start/End: Original strand, 40387429 - 40387748
Alignment:
| Q |
19 |
ttccccatggtgccttgatgaacttgtgaaaattcttgaatgtagaaaattgaataatcaattagtttggccaatcttttacaaagtagagccatcagac |
118 |
Q |
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|||| ||||||| ||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40387429 |
ttccacatggtgtcttgatgaacttgtgaagattcttgaatgtaagaaatggaataatcaattagtttggccaatcttttacaaagtagagccatcagac |
40387528 |
T |
|
| Q |
119 |
ataaggcatttgagaaatggttatggcaaagccatggctcaacatgaaaacaaatttggaatcgactcggagagagtacaaaaatggaagtcagctttgc |
218 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
40387529 |
ataaggcatttgagaaatggttatggcaaagacatggctcaacatgaaaaaaaattcggaattgactcggagagagtacaaaaatggaagtcagcattgc |
40387628 |
T |
|
| Q |
219 |
ttgaagtttctaatttgtctggaaagacttacacgaccgggtatgaatatgaattcatccaaaagatcgtggaagatgccaatcatattaaaagttgttt |
318 |
Q |
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||||||||||||||||||| |||| |||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||| ||||||||||| |||| |
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| T |
40387629 |
ttgaagtttctaatttgtccggaatgacttacacgactgggtatgaatatgaatttatccaaaagattgtagaagatgccaataatattaaaagtcgttt |
40387728 |
T |
|
| Q |
319 |
gcaaataacaagcatataga |
338 |
Q |
| |
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||||||| |||| |||||| |
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| T |
40387729 |
gcaaatacgaagcgtataga |
40387748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 341
Target Start/End: Original strand, 40334151 - 40334473
Alignment:
| Q |
19 |
ttccccatggtgccttgatgaacttgtgaaaattcttgaatgtagaaaattgaataatcaattagtttggccaatcttttacaaagtagagccatcagac |
118 |
Q |
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|||| ||||||| ||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40334151 |
ttccacatggtgtcttgatgaacttgtgaagattcttgaatgtaagaaatggaataatcaattagtttggccaatcttttacaaagtagagccatcagac |
40334250 |
T |
|
| Q |
119 |
ataaggcatttgagaaatggttatggcaaagccatggctcaacatgaaaacaaatttggaatcgactcggagagagtacaaaaatggaagtcagctttgc |
218 |
Q |
| |
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||||||||||||||||| |||||||||||| ||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
40334251 |
ataaggcatttgagaaaaagttatggcaaagacatggctcaacatgaaagaagatttggaatagactcggagagagtacaaaaatggaagtctgctttgc |
40334350 |
T |
|
| Q |
219 |
ttgaagtttctaatttgtctggaaagacttacacgaccgggtatgaatatgaattcatccaaaagatcgtggaagatgccaatcatattaaaagttgttt |
318 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||| |||| |||||||||||| || |||||||||||||||||||||||||||||||||||| |||| |
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| T |
40334351 |
ttgaagtttctaatttgtccggaatgacttacacgactgggtttgaatatgaatttattcaaaagatcgtggaagatgccaatcatattaaaagtcgttt |
40334450 |
T |
|
| Q |
319 |
gcaaataacaagcatatagattt |
341 |
Q |
| |
|
||||||| |||||||||||||| |
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|
| T |
40334451 |
gcaaatacaaagcatatagattt |
40334473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 338
Target Start/End: Original strand, 40377184 - 40377503
Alignment:
| Q |
19 |
ttccccatggtgccttgatgaacttgtgaaaattcttgaatgtagaaaattgaataatcaattagtttggccaatcttttacaaagtagagccatcagac |
118 |
Q |
| |
|
|||| ||||||| ||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40377184 |
ttccacatggtgtcttgatgaacttgtgaagattcttgaatgtaagaaatggaataatcaattagtttggccaatcttttacaaagtagagccatcagac |
40377283 |
T |
|
| Q |
119 |
ataaggcatttgagaaatggttatggcaaagccatggctcaacatgaaaacaaatttggaatcgactcggagagagtacaaaaatggaagtcagctttgc |
218 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40377284 |
ataaggcatttgagaaaaggttatggcaaagacatggctcaacatgaaaaaaagtttggaatagactcggagagagtacaaaaatggaagtcagctttgc |
40377383 |
T |
|
| Q |
219 |
ttgaagtttctaatttgtctggaaagacttacacgaccgggtatgaatatgaattcatccaaaagatcgtggaagatgccaatcatattaaaagttgttt |
318 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||| || |||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| |||| |
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|
| T |
40377384 |
ttgaagtttctaatttgtctggaatgacttacgagactggatatgaatatgaatttatccaaaagattgtggaagatgccaataatattaaaagtcgttt |
40377483 |
T |
|
| Q |
319 |
gcaaataacaagcatataga |
338 |
Q |
| |
|
||||||| || |||||||| |
|
|
| T |
40377484 |
gcaaatacgaaacatataga |
40377503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 40597549 - 40597305
Alignment:
| Q |
19 |
ttccccatggtgccttgatgaacttgtgaaaattcttgaatgtagaaaattgaataatcaattagtttggccaatcttttacaaagtagagccatcagac |
118 |
Q |
| |
|
|||| ||||||| ||||| |||||||| |||||| | || |||| |||||||| |||||||||||||||||||||||||||||||| | || |||||| |
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| T |
40597549 |
ttcctcatggtgtcttgaagaacttgtcaaaattatggagtgtatgaaattgaagaatcaattagtttggccaatcttttacaaagtgaaaccgtcagac |
40597450 |
T |
|
| Q |
119 |
ataaggcatttgagaaatggttatggcaaagccatggctcaacatgaaaacaaatttggaatcgactcggagagagtacaaaaatggaagtcagctttgc |
218 |
Q |
| |
|
|||||||||||||||||| |||||||| ||| |||||||||||||||||| || |||||||| ||||| ||||||||||| |||||||||||||||||| |
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|
| T |
40597449 |
ataaggcatttgagaaattgttatggcgaagacatggctcaacatgaaaataattttggaattgactcagagagagtacagaaatggaagtcagctttgt |
40597350 |
T |
|
| Q |
219 |
ttgaagtttctaatttgtctggaaagacttacacgaccgggtatg |
263 |
Q |
| |
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||||||| || |||||||| |||||| |||| || |||||||||| |
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| T |
40597349 |
ttgaagtgtcgaatttgtccggaaaggcttatacaaccgggtatg |
40597305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 40278026 - 40278260
Alignment:
| Q |
15 |
caagttccccatggtgccttgatgaacttgtgaaaattcttgaatgtagaaaattgaataatcaattagtttggccaatcttttacaaagtagagccatc |
114 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| || |||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||| |||||||| |
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| T |
40278026 |
caagttccacatggtgtcttgatgaacttgtcaagattcttgaatgtaggaaatcgaataatcaattagtttggccgatctttttcaaagtggagccatc |
40278125 |
T |
|
| Q |
115 |
agacataaggcatttgagaaatggttatggcaaagccatggctcaacatgaaaacaaatttggaatcgactcggagagagtacaaaaatggaagtcagct |
214 |
Q |
| |
|
||| |||||| || ||||| | |||||||||||| |||||||| |||||||| | ||||||||| ||||||||||||||||||||||||| |||||| |
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|
| T |
40278126 |
agaaataaggtatatgagagaatgttatggcaaagacatggctcgacatgaaagaagatttggaatagactcggagagagtacaaaaatggagatcagct |
40278225 |
T |
|
| Q |
215 |
ttgcttgaagtttctaatttgtctggaaagactta |
249 |
Q |
| |
|
||| | ||||| |||||| | || ||||||||||| |
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|
| T |
40278226 |
ttgatcgaagtgtctaatatatccggaaagactta |
40278260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 40303685 - 40303919
Alignment:
| Q |
15 |
caagttccccatggtgccttgatgaacttgtgaaaattcttgaatgtagaaaattgaataatcaattagtttggccaatcttttacaaagtagagccatc |
114 |
Q |
| |
|
|||||||| |||||| |||||||| |||| ||| || ||| | |||| || | ||| |||||||| |||||||| |||||||||||||| | || || |
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|
| T |
40303685 |
caagttcctaatggtgtcttgatgagcttgcgaagatccttcagtgtaagaagtcgaagaatcaattggtttggcctatcttttacaaagtgaaaccttc |
40303784 |
T |
|
| Q |
115 |
agacataaggcatttgagaaatggttatggcaaagccatggctcaacatgaaaacaaatttggaatcgactcggagagagtacaaaaatggaagtcagct |
214 |
Q |
| |
|
||| ||||| ||| |||||||| ||||||||||| ||| || ||||| || | ||||| |||| || || |||||| |||| ||||||||||||||| |
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|
| T |
40303785 |
agatataagacatatgagaaatagttatggcaaatatatgactgaacataaacaaaaattcggaagtgattctgagagattacagaaatggaagtcagct |
40303884 |
T |
|
| Q |
215 |
ttgcttgaagtttctaatttgtctggaaagactta |
249 |
Q |
| |
|
|| ||||||||||| ||||||||||||| |||| |
|
|
| T |
40303885 |
ttttttgaagtttctggtttgtctggaaaggctta |
40303919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 24 - 241
Target Start/End: Complemental strand, 40256885 - 40256668
Alignment:
| Q |
24 |
catggtgccttgatgaacttgtgaaaattcttgaatgtagaaaattgaataatcaattagtttggccaatcttttacaaagtagagccatcagacataag |
123 |
Q |
| |
|
||||||| || ||||||||||| || |||||||| |||| ||| |||| |||||||||||||||||||| ||||||||||| ||||||||||| |||| |
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|
| T |
40256885 |
catggtgtctcgatgaacttgttaagattcttgagtgtatgaaaatgaagaatcaattagtttggccaattttttacaaagtggagccatcagatgtaag |
40256786 |
T |
|
| Q |
124 |
gcatttgagaaatggttatggcaaagccatggctcaacatgaaaacaaatttggaatcgactcggagagagtacaaaaatggaagtcagctttgcttgaa |
223 |
Q |
| |
|
| || || ||| ||||||| ||||| ||| || |||||||||| || ||||||| || | |||| |||||||||||| ||||||||| || || |
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|
| T |
40256785 |
gtatcagaagaatagttatggtaaagcaatgactgaacatgaaaataattttggaaatgattatgagaagatacaaaaatggagatcagctttgtttcaa |
40256686 |
T |
|
| Q |
224 |
gtttctaatttgtctgga |
241 |
Q |
| |
|
||| | || ||||||||| |
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|
| T |
40256685 |
gttgccaacttgtctgga |
40256668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 339
Target Start/End: Complemental strand, 40596927 - 40596846
Alignment:
| Q |
258 |
ggtatgaatatgaattcatccaaaagatcgtggaagatgccaatcatattaaaagttgtttgcaaataacaagcatatagat |
339 |
Q |
| |
|
|||| ||| ||||||| || |||||||| ||||||||||||||| || |||||| ||||||||||| ||||| |||||| |
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|
| T |
40596927 |
ggtacgaacatgaatttattcaaaagattttggaagatgccaatcgtaaaaaaagtcgtttgcaaatacgaagcacatagat |
40596846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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