View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9216_high_2 (Length: 246)
Name: NF9216_high_2
Description: NF9216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9216_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 34520558 - 34520331
Alignment:
| Q |
1 |
cctttgtgatctattcttcaagaatcgagtgtaatgtattagtaagcatctactcataataatactctaatttcacattattagagctgcatttaggagt |
100 |
Q |
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| T |
34520558 |
cctttgtgatctattcttcaagaatcgagtgtaatgtattagtaagcatctactcataataatactctaatttcacattattagagctgcatttaggagt |
34520459 |
T |
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| Q |
101 |
atgttccaagtatcaggcagtcctggtaagcaccagtgactacagtcattgcctgtatggtccttagtatagatagaaggatgtccatcttttcttagtt |
200 |
Q |
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| T |
34520458 |
atgttccaagtatcaggcagtcctggtaagcaccagtgactacagtcattgcctgtatgatctttagtatagatagaaggatgtccatcttttcttagtt |
34520359 |
T |
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| Q |
201 |
gtgagagtaatgttatgtcaagtagata |
228 |
Q |
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| T |
34520358 |
gtgagagtaatgttatgtcaagtagata |
34520331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 61 - 228
Target Start/End: Complemental strand, 34508347 - 34508180
Alignment:
| Q |
61 |
aatactctaatttcacattattagagctgcatttaggagtatgttccaagtatcaggcagtcctggtaagcaccagtgactacagtcattgcctgtatgg |
160 |
Q |
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| T |
34508347 |
aatactctaatttcaaatgattagagctgcatttaggagtatgttccaagtatcaggcagtcctggtaggcaccaatgactacaatcaatgccagttgga |
34508248 |
T |
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| Q |
161 |
tccttagtatagatagaaggatgtccatcttttcttagttgtgagagtaatgttatgtcaagtagata |
228 |
Q |
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| T |
34508247 |
tccttagtatagatagaaggatgtgcatcttttcttagttgtgacagaagtgttatgtcaagtagata |
34508180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 103 - 228
Target Start/End: Original strand, 4685926 - 4686051
Alignment:
| Q |
103 |
gttccaagtatcaggcagtcctggtaagcaccagtgactacagtcattgcctgtatggtccttagtatagatagaaggatgtccatcttttcttagttgt |
202 |
Q |
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||||||||||||||| | ||||||||||||||| || || || |||||||||| ||| || | ||||| |||||| ||| ||||||| ||||||||| |
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| T |
4685926 |
gttccaagtatcaggtaatcctggtaagcaccaatggctgcaatcattgcctgcatgatcaccactataggaagaagggtgtgcatctttccttagttgt |
4686025 |
T |
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| Q |
203 |
gagagtaatgttatgtcaagtagata |
228 |
Q |
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||||| | ||| |||||||||||||| |
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| T |
4686026 |
gagagaagtgtaatgtcaagtagata |
4686051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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