View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9216_low_1 (Length: 380)
Name: NF9216_low_1
Description: NF9216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9216_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 34820961 - 34821307
Alignment:
| Q |
18 |
gttccatgcataatcaaatgtctcgagcatttgagattttactttacaagcttcaccatcggtcttcatctgttcaacaaatagtattgcgcaaataaat |
117 |
Q |
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| T |
34820961 |
gttccatgcataatcaaatgtctcgagcatttgagattttactttacaagcttcaccatcggtcttcatctgttcaacaaatggtattgcgcaaataaat |
34821060 |
T |
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| Q |
118 |
cattgaaattaaaaatatttgcaaatcatttgtttaagataaaattttacttgtcttccctaaatgcaagacttgatatcaattaattgtgtaaattatt |
217 |
Q |
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| T |
34821061 |
cattgaaattaaaaatatttgcaaatcatttgtttaagataaaattttacttgtcttccctaaatgcaagacttgatatcaattaattgtgtaaattatt |
34821160 |
T |
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| Q |
218 |
tccacaaacatcattagagatcattgcttaacatttactatggtctgttaggtacgtaatggattaactcataactagagacaatacttatttgatttca |
317 |
Q |
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| T |
34821161 |
tccacaaacatcattagagatcattgcttaacatttactatggtctgttaggtacgtaatggattaactcataactagagacaatacttatttgatttca |
34821260 |
T |
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| Q |
318 |
taattatcaacaatcatggactttgtgatattaatctagctttttgg |
364 |
Q |
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| T |
34821261 |
taattatcaacaatcatggactttgtgatattaatctagctttttgg |
34821307 |
T |
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