View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9217_low_2 (Length: 614)

Name: NF9217_low_2
Description: NF9217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9217_low_2
NF9217_low_2
[»] chr1 (16 HSPs)
chr1 (143-560)||(32303055-32303472)
chr1 (50-146)||(28451266-28451362)
chr1 (48-143)||(22061923-22062019)
chr1 (53-147)||(25347698-25347792)
chr1 (269-485)||(46781215-46781431)
chr1 (475-561)||(11649368-11649454)
chr1 (66-149)||(12440820-12440903)
chr1 (442-540)||(4534515-4534613)
chr1 (442-543)||(16587039-16587140)
chr1 (480-558)||(28424932-28425010)
chr1 (284-560)||(3860864-3861140)
chr1 (268-321)||(11649159-11649212)
chr1 (293-384)||(24662161-24662252)
chr1 (411-537)||(10490787-10490913)
chr1 (479-549)||(14794683-14794753)
chr1 (480-549)||(23027935-23028004)
[»] chr5 (14 HSPs)
chr5 (341-561)||(39365548-39365768)
chr5 (143-389)||(24518716-24518962)
chr5 (270-560)||(35076865-35077155)
chr5 (146-362)||(41913619-41913835)
chr5 (51-146)||(9164198-9164293)
chr5 (193-364)||(6022795-6022965)
chr5 (58-144)||(30672483-30672569)
chr5 (50-130)||(19351506-19351586)
chr5 (480-560)||(43464753-43464833)
chr5 (442-560)||(34423757-34423875)
chr5 (475-560)||(22033838-22033923)
chr5 (431-542)||(12237532-12237643)
chr5 (477-560)||(41913950-41914033)
chr5 (480-537)||(41778583-41778640)
[»] chr4 (20 HSPs)
chr4 (143-560)||(12726182-12726599)
chr4 (272-560)||(46218688-46218976)
chr4 (475-602)||(19497970-19498097)
chr4 (51-146)||(44720654-44720749)
chr4 (48-148)||(19615105-19615205)
chr4 (48-142)||(34723745-34723839)
chr4 (475-560)||(54846163-54846248)
chr4 (478-560)||(7705168-7705250)
chr4 (61-109)||(10819984-10820032)
chr4 (479-560)||(50609444-50609525)
chr4 (442-560)||(12832914-12833032)
chr4 (420-518)||(25057282-25057380)
chr4 (401-501)||(46610023-46610123)
chr4 (479-522)||(12377462-12377505)
chr4 (476-546)||(6519476-6519545)
chr4 (275-345)||(7704965-7705035)
chr4 (144-216)||(25317346-25317415)
chr4 (478-535)||(32227269-32227326)
chr4 (475-519)||(30567311-30567355)
chr4 (276-320)||(41147576-41147620)
[»] chr6 (16 HSPs)
chr6 (341-558)||(13215229-13215446)
chr6 (272-548)||(9312613-9312889)
chr6 (272-560)||(2683286-2683574)
chr6 (51-146)||(12853068-12853163)
chr6 (275-364)||(23286897-23286986)
chr6 (442-537)||(14392809-14392903)
chr6 (475-560)||(32159561-32159647)
chr6 (425-537)||(21605741-21605853)
chr6 (486-560)||(23287106-23287180)
chr6 (479-560)||(17738372-17738453)
chr6 (474-537)||(2013458-2013521)
chr6 (509-560)||(17798710-17798761)
chr6 (479-517)||(29071890-29071928)
chr6 (479-517)||(29104463-29104501)
chr6 (404-540)||(28590869-28591005)
chr6 (269-321)||(32159801-32159853)
[»] chr7 (17 HSPs)
chr7 (274-560)||(21376055-21376341)
chr7 (341-560)||(13063659-13063878)
chr7 (269-560)||(44362518-44362809)
chr7 (475-614)||(31396022-31396161)
chr7 (48-146)||(7137931-7138029)
chr7 (51-146)||(43306239-43306335)
chr7 (47-109)||(40352199-40352261)
chr7 (278-438)||(39464412-39464572)
chr7 (269-321)||(27000382-27000434)
chr7 (66-144)||(40023132-40023212)
chr7 (275-347)||(31395823-31395895)
chr7 (460-543)||(18132739-18132822)
chr7 (460-543)||(18144526-18144609)
chr7 (293-540)||(47801080-47801327)
chr7 (479-537)||(6800247-6800305)
chr7 (266-318)||(23761833-23761885)
chr7 (480-560)||(25987658-25987738)
[»] chr8 (8 HSPs)
chr8 (269-560)||(20129262-20129553)
chr8 (48-146)||(11660964-11661062)
chr8 (476-558)||(25109530-25109612)
chr8 (66-141)||(24948396-24948471)
chr8 (266-318)||(5513383-5513435)
chr8 (509-560)||(25320055-25320106)
chr8 (143-300)||(25109788-25109944)
chr8 (484-540)||(3773663-3773719)
[»] chr2 (13 HSPs)
chr2 (269-560)||(24220626-24220917)
chr2 (269-537)||(37598873-37599141)
chr2 (442-537)||(32487912-32488007)
chr2 (266-366)||(5539482-5539582)
chr2 (290-560)||(18697255-18697517)
chr2 (428-558)||(5663407-5663538)
chr2 (416-522)||(34116041-34116147)
chr2 (424-549)||(37108588-37108713)
chr2 (476-542)||(15139927-15139993)
chr2 (442-543)||(37325917-37326018)
chr2 (444-516)||(2089720-2089792)
chr2 (274-354)||(3156195-3156275)
chr2 (480-540)||(20213778-20213838)
[»] chr3 (12 HSPs)
chr3 (478-605)||(12950330-12950457)
chr3 (479-614)||(36731123-36731258)
chr3 (268-321)||(12950122-12950175)
chr3 (268-540)||(18378069-18378341)
chr3 (274-366)||(36730918-36731010)
chr3 (287-366)||(33335355-33335434)
chr3 (479-537)||(41225940-41225998)
chr3 (480-549)||(1233355-1233424)
chr3 (479-560)||(55428241-55428322)
chr3 (475-559)||(32517306-32517390)
chr3 (480-540)||(35273317-35273377)
chr3 (428-540)||(42830602-42830714)
[»] scaffold1185 (1 HSPs)
scaffold1185 (416-537)||(1529-1650)
[»] scaffold0092 (1 HSPs)
scaffold0092 (143-243)||(22773-22873)
[»] scaffold0123 (1 HSPs)
scaffold0123 (442-535)||(46192-46285)
[»] scaffold0036 (1 HSPs)
scaffold0036 (475-552)||(3431-3508)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 143 - 560
Target Start/End: Original strand, 32303055 - 32303472
Alignment:
Q  143 cctagccatagccaaacctgataccaaagggaaccaaagacttcacactccaaaaataaatgtgttgttgtttcgtggctgcgacaaccatacacacaaa 242  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  32303055 cctaggcatagccaaacctgataccaaagggaaccaaagacttcacactccaaaaataaatgtgttgttgtttcgtggctgccacaaccagacacacaaa 32303154  T
Q  243 atgcttcctcatgagatagagccctccgcctcaccaaattgtccttggttggaagtctattgcgaagaaggcgccacacgaatactaacaccttagaagg 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32303155 atgcttcctcatgagatagagccctccgcctcaccaaattgtccttggttggaagtctattgcgaagaaggcgccacacgaacactaacaccttagaagg 32303254  T
Q  343 aatttgcttatgccaaatgtcgtcgactagggacctatccaccaactcatcagaattagtgagaaattggtaagctccccacaccgaataaccatgggaa 442  Q
    ||| |||| ||||||||| ||| | |   ||||||| |||  ||||||    | | ||||||||||  ||||||| || | ||| ||||| ||||| | |    
T  32303255 aatatgctgatgccaaatatcgacaaactgggacctgtccgtcaactcggtcgtagtagtgagaaaacggtaagccccacgcacagaatatccatgagta 32303354  T
Q  443 ggatctaacaaccagcgccaagtatcattggtattttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagcca 542  Q
     | |||| ||||||   ||||||||| | |  || |||||| |||||||| ||||| | ||||| | |||||||||||||  ||||||||||||| ||||    
T  32303355 cggtctagcaaccacttccaagtatcttcgacatgttcctgaaaaacaatgttatggagtaacataaaacactccctcacactctcctcctcccacgcca 32303454  T
Q  543 ataaacgccgacgccaca 560  Q
    | ||||| ||||||||||    
T  32303455 acaaacgtcgacgccaca 32303472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 50 - 146
Target Start/End: Complemental strand, 28451362 - 28451266
Alignment:
Q  50 caccaaccgaaccgagccgaaccgcacatattttattttttggatcggatcactttttgcctcgtacccgagccgaaccgcactgcgaacaccccta 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || ||||| ||||||||||||||||||||||||    
T  28451362 caccaaccgaaccgagccgaaccgcacatattttattttttggatcggttcactttttgcttcataaccgagtcgaaccgcactgcgaacaccccta 28451266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 48 - 143
Target Start/End: Original strand, 22061923 - 22062019
Alignment:
Q  48 agcaccaaccgaaccgagccgaaccgcacatatttt-attttttggatcggatcactttttgcctcgtacccgagccgaaccgcactgcgaacaccc 143  Q
    |||||||||||||||||||||||||||| || |||| |||||||||||||| |||||||||||||| || |||||||||||||||| ||||||||||    
T  22061923 agcaccaaccgaaccgagccgaaccgcatatttttttattttttggatcggttcactttttgcctcataaccgagccgaaccgcaccgcgaacaccc 22062019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 53 - 147
Target Start/End: Original strand, 25347698 - 25347792
Alignment:
Q  53 caaccgaaccgagccgaaccgcacatattttattttttggatcggatcactttttgcctcgtacccgagccgaaccgcactgcgaacacccctag 147  Q
    ||||||||||||||| |||||||||| ||||| |||||||||||| |||||||||||||| || |||||||||||| ||| ||||||||||||||    
T  25347698 caaccgaaccgagccaaaccgcacatgttttactttttggatcggttcactttttgcctcataaccgagccgaaccacaccgcgaacacccctag 25347792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 269 - 485
Target Start/End: Complemental strand, 46781431 - 46781215
Alignment:
Q  269 cgcctcaccaaattgtccttggttggaagtctattgcgaagaaggcgccacacgaatactaacaccttagaaggaatttgcttatgccaaatgtcgtcga 368  Q
    ||||||||||| ||||| || || ||||||||  ||||||||| |||||| || |  |   ||||||| || ||||||| |||||||||||||||||| |    
T  46781431 cgcctcaccaagttgtctttagtgggaagtctgctgcgaagaaagcgccaaaccatcagggacacctttgagggaattttcttatgccaaatgtcgtcaa 46781332  T
Q  369 ctagggacctatccaccaactcatcagaattagtgagaaattggtaagctccccacaccgaataaccatgggaaggatctaacaaccagcgccaagtatc 468  Q
    |||  | || ||||||||||||  | ||| ||||||||||  |||||||||||| ||||||||| ||||| |||||||| | |||||| ||||||  | |    
T  46781331 ctaacgtccgatccaccaactcgcctgaagtagtgagaaagcggtaagctccccgcaccgaatatccatgagaaggatcaagcaaccaacgccaatcacc 46781232  T
Q  469 attggtattttcctgca 485  Q
    | || ||||||||||||    
T  46781231 actgatattttcctgca 46781215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 475 - 561
Target Start/End: Original strand, 11649368 - 11649454
Alignment:
Q  475 attttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataaacgccgacgccacat 561  Q
    |||||||||||||||||| ||||| | ||| |||||||||||||||||  |||||||| ||||||||||| |||||||| |||||||    
T  11649368 attttcctgcaaaacaatgttatgaagtaaaacagaacactccctcacactctcctccacccaagccaatgaacgccgatgccacat 11649454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 66 - 149
Target Start/End: Complemental strand, 12440903 - 12440820
Alignment:
Q  66 ccgaaccgcacatattttattttttggatcggatcactttttgcctcgtacccgagccgaaccgcactgcgaacacccctagcc 149  Q
    ||||||||||||| |||||||||||| ||||| |||||||||||||| || |||||||||||| |||  |||||||||| ||||    
T  12440903 ccgaaccgcacattttttattttttgtatcggttcactttttgcctcataaccgagccgaaccacaccacgaacaccccaagcc 12440820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 442 - 540
Target Start/End: Complemental strand, 4534613 - 4534515
Alignment:
Q  442 aggatctaacaaccagcgccaagtatcattggtattttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagc 540  Q
    |||||| |||||||| | ||||||||||||  |||||||||||||||||| ||||  |||||||| ||| |||||||  ||  ||||||||||||||||    
T  4534613 aggatccaacaaccatctccaagtatcattaatattttcctgcaaaacaacattagataataacatagagcactcccgaacactctcctcctcccaagc 4534515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 442 - 543
Target Start/End: Complemental strand, 16587140 - 16587039
Alignment:
Q  442 aggatctaacaaccagcgccaagtatcattggtattttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagcc 541  Q
    |||||| |||||||| | |||||||||||    | | |||||||||||||  ||||| ||||||||||| |||||||||||  |||||||||||||||||    
T  16587140 aggatcgaacaaccacctccaagtatcatgaacaatatcctgcaaaacaacgttatgaaataacacagagcactccctcacactctcctcctcccaagcc 16587041  T
Q  542 aa 543  Q
    ||    
T  16587040 aa 16587039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 480 - 558
Target Start/End: Original strand, 28424932 - 28425010
Alignment:
Q  480 cctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataaacgccgacgcca 558  Q
    ||||||||||||||  ||||||||||||| |||||||||||||||  || |||||| ||||||| |||| ||| |||||    
T  28424932 cctgcaaaacaataggatgtaataacacacaacactccctcacttgttcttcctcctaagccaaaaaactccgccgcca 28425010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 560
Target Start/End: Complemental strand, 3861140 - 3860864
Alignment:
Q  284 tccttggttggaagtctattgcgaagaaggcgccacacgaatactaacaccttagaaggaatttgcttatgccaaatgtcgtcgactagggacctatcca 383  Q
    ||||| |||| |||||| ||||||||||||||||| || || || ||||||| ||| || || || |||||||||| ||||   ||| |  ||||||||     
T  3861140 tccttagttgaaagtctgttgcgaagaaggcgccaaacaaacacaaacacctcagaggggatatgtttatgccaaacgtcgataacttgatacctatccg 3861041  T
Q  384 ccaactcatcagaattagtgagaaattggtaagctccccacaccgaataaccatgggaaggatctaacaaccagcgccaagtatcattggtattttcctg 483  Q
    || ||||| | ||| | ||||||||    ||||| |||| ||||||||| |||||   ||||||||| |  || | ||||||||| |    | | |||||    
T  3861040 ccgactcacctgaagttgtgagaaagcaataagccccccgcaccgaatatccatgaataggatctaaaagtcacctccaagtatcctctacagtatcctg 3860941  T
Q  484 caaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataaacgccgacgccaca 560  Q
    ||||||||| ||    | |||||||||||||||||||||  ||||||||||||  ||||| ||||| || |||||||    
T  3860940 caaaacaatgttcaaaagtaacacagaacactccctcacactctcctcctcccgcgccaacaaacgtcgtcgccaca 3860864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 268 - 321
Target Start/End: Original strand, 11649159 - 11649212
Alignment:
Q  268 ccgcctcaccaaattgtccttggttggaagtctattgcgaagaaggcgccacac 321  Q
    ||||| |||||| ||||| || ||||||||||||||||||||||| ||||||||    
T  11649159 ccgccgcaccaagttgtcttttgttggaagtctattgcgaagaagacgccacac 11649212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 384
Target Start/End: Complemental strand, 24662252 - 24662161
Alignment:
Q  293 ggaagtctattgcgaagaaggcgccacacgaatactaacaccttagaaggaatttgcttatgccaaatgtcgtcgactagggacctatccac 384  Q
    ||||||||||||||||||||||||||||| || |    |||||| || ||||| ||||| ||||| ||||| ||||| || | |||||||||    
T  24662252 ggaagtctattgcgaagaaggcgccacacaaacagactcacctttgatggaatatgcttgtgccagatgtcatcgacaagtgtcctatccac 24662161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 411 - 537
Target Start/End: Complemental strand, 10490913 - 10490787
Alignment:
Q  411 ggtaagctccccacaccgaataaccatgggaaggatctaacaaccagcgccaagtatcattggtattttcctgcaaaacaatattatgtaataacacaga 510  Q
    |||||||| | | ||||||||| |||||   | ||||||||||||| | |||||||||||    ||||| || |||||||| ||| || || | || |||    
T  10490913 ggtaagcttctcgcaccgaatatccatgaacaagatctaacaaccacctccaagtatcataaacatttttctacaaaacaacattgtgaaacagcaaaga 10490814  T
Q  511 acactccctcactttctcctcctccca 537  Q
    ||||||||||||  |||||||||||||    
T  10490813 acactccctcacactctcctcctccca 10490787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 479 - 549
Target Start/End: Original strand, 14794683 - 14794753
Alignment:
Q  479 tcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataaacg 549  Q
    ||||||||||||||||||| ||| |   ||||||||||||||||  |||| ||||||||||| || |||||    
T  14794683 tcctgcaaaacaatattatataacacttcagaacactccctcacactctcttcctcccaagctaacaaacg 14794753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 549
Target Start/End: Original strand, 23027935 - 23028004
Alignment:
Q  480 cctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataaacg 549  Q
    |||||||||||| |||||||||||| |  |||||||||| |||   ||||||||||||||| || |||||    
T  23027935 cctgcaaaacaacattatgtaataatatggaacactcccgcacacactcctcctcccaagcaaacaaacg 23028004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 193; Significance: 1e-104; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 341 - 561
Target Start/End: Complemental strand, 39365768 - 39365548
Alignment:
Q  341 ggaatttgcttatgccaaatgtcgtcgactagggacctatccaccaactcatcagaattagtgagaaattggtaagctccccacaccgaataaccatggg 440  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  39365768 ggaatttgcttatgccaaatgtcgtcgactagggacctatccaccaactcatcagaattagtgagaaattggtaagctccccacaccgaataactgtggg 39365669  T
Q  441 aaggatctaacaaccagcgccaagtatcattggtattttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagc 540  Q
    |||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39365668 aaggatctaacaaccaacgccaagtatcattgccattttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagc 39365569  T
Q  541 caataaacgccgacgccacat 561  Q
    ||||||||| | |||||||||    
T  39365568 caataaacgacaacgccacat 39365548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 143 - 389
Target Start/End: Original strand, 24518716 - 24518962
Alignment:
Q  143 cctagccatagccaaacctgataccaaagggaaccaaagacttcacactccaaaaataaatgtgttgttgtttcgtggctgcgacaaccatacacacaaa 242  Q
    |||||||| |||||||||||| |||||||||| || ||||| |||||  ||||||||||||| ||||||||||| || || | ||| ||| |||||||||    
T  24518716 cctagccaaagccaaacctgagaccaaagggatccgaagacgtcacaacccaaaaataaatgcgttgttgtttcttgactcccacatccagacacacaaa 24518815  T
Q  243 atgcttcctcatgagatagagccctccgcctcaccaaattgtccttggttggaagtctattgcgaagaaggcgccacacgaatactaacaccttagaagg 342  Q
      || || |||||||| ||| ||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||    
T  24518816 ccgcgtcttcatgagagagaaccctccgccgcacaaaattgtccttggttggaagtctattgcggagaaggcgccacacgaacactgacaccttagaagg 24518915  T
Q  343 aatttgcttatgccaaatgtcgtcgactagggacctatccaccaact 389  Q
     ||||| | ||||||||| ||| | ||| ||||||||||||||||||    
T  24518916 gatttgttgatgccaaatatcgacaacttgggacctatccaccaact 24518962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 270 - 560
Target Start/End: Complemental strand, 35077155 - 35076865
Alignment:
Q  270 gcctcaccaaattgtccttggttggaagtctattgcgaagaaggcgccacacgaatactaacaccttagaaggaatttgcttatgccaaatgtcgtcgac 369  Q
    |||||||||| |||||||| || |||||||| | ||||||||| ||||| || |  |   ||||||| || |||||||| |||||||||||||| || ||    
T  35077155 gcctcaccaagttgtccttagtgggaagtctgtcgcgaagaagacgccaaaccatcagagacacctttgagggaatttgtttatgccaaatgtcatcaac 35077056  T
Q  370 tagggacctatccaccaactcatcagaattagtgagaaattggtaagctccccacaccgaataaccatgggaaggatctaacaaccagcgccaagtatca 469  Q
    ||    |  ||||||||||||  | ||||||||||||||  |||||||||||| ||||||||| ||||| |||||||| | |||||| ||| |   ||||    
T  35077055 taacatctgatccaccaactcgcctgaattagtgagaaaacggtaagctccccgcaccgaatacccatgagaaggatcaagcaaccaacgctagtcatca 35076956  T
Q  470 ttggtattttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataaacgccgacgccaca 560  Q
     || ||||||||||||||||||| ||| ||||||||| |||||||||||||||  ||||||||||||| |||  |||||| ||||||||||    
T  35076955 ctgatattttcctgcaaaacaatgttacgtaataacatagaacactccctcacactctcctcctcccacgcccgtaaacgacgacgccaca 35076865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 146 - 362
Target Start/End: Original strand, 41913619 - 41913835
Alignment:
Q  146 agccatagccaaacctgataccaaagggaaccaaagacttcacactccaaaaataaatgtgttgttgtttcgtggctgcgacaaccatacacacaaaatg 245  Q
    ||||| |||||||||||| ||||||| ||||| ||||  |||||  |||||||||||||  ||| ||| || || || |  |||||| | |||||||  |    
T  41913619 agccaaagccaaacctgagaccaaagtgaaccgaagatgtcacatcccaaaaataaatgatttgatgtctcttgactcccgcaaccagatacacaaatcg 41913718  T
Q  246 cttcctcatgagatagagccctccgcctcaccaaattgtccttggttggaagtctattgcgaagaaggcgccacacgaatactaacaccttagaaggaat 345  Q
    | ||||||||||| |   |||||||||  || ||||| ||||| |||||||||||||| ||||||||||||||||| || ||  ||||||||||||||||    
T  41913719 catcctcatgagaaatgaccctccgccgtacaaaattatccttagttggaagtctattacgaagaaggcgccacacaaacaccgacaccttagaaggaat 41913818  T
Q  346 ttgcttatgccaaatgt 362  Q
     |||| |||||||||||    
T  41913819 ctgctgatgccaaatgt 41913835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 51 - 146
Target Start/End: Original strand, 9164198 - 9164293
Alignment:
Q  51 accaaccgaaccgagccgaaccgcacatattttattttttggatcggatcactttttgcctcgtacccgagccgaaccgcactgcgaacaccccta 146  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| || || ||||||||||| |||| || ||||||||||    
T  9164198 accaaccgaaccgagccgaactgcacatattttattttttggatcggttcactttttgcttcataaccgagccgaactgcaccgcaaacaccccta 9164293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 193 - 364
Target Start/End: Original strand, 6022795 - 6022965
Alignment:
Q  193 caaaaataaatgtgttgttgtttcgtggctgcgacaaccatacacacaaaatgcttcctcatgagatagagccctccgcctcaccaaattgtccttggtt 292  Q
    ||||||||||||||||   ||||| || || | ||| ||| ||||||| || || || || ||||| |||  |||||||| |||||||||||||||||||    
T  6022795 caaaaataaatgtgttaccgtttcctgactcccacatccagacacacataacgcgtcttcctgagagagaatcctccgccgcaccaaattgtccttggtt 6022894  T
Q  293 ggaagtctattgcgaagaaggcgccacacgaatactaacaccttagaaggaatttgcttatgccaaatgtcg 364  Q
    |||||||| || ||||||||||||||||| || ||  ||||||| ||||||||||||| |||||||| ||||    
T  6022895 ggaagtctgttacgaagaaggcgccacac-aaaacagacaccttggaaggaatttgctgatgccaaacgtcg 6022965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 30672483 - 30672569
Alignment:
Q  58 gaaccgagccgaaccgcacatattttattttttggatcggatcactttttgcctcgtacccgagccgaaccgcactgcgaacacccc 144  Q
    |||||||||||||||||| || |||||||||||||||||| |||||||||||||| || |||||||||||||||| || ||||||||    
T  30672483 gaaccgagccgaaccgcatatgttttattttttggatcggttcactttttgcctcataaccgagccgaaccgcaccgcaaacacccc 30672569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 50 - 130
Target Start/End: Original strand, 19351506 - 19351586
Alignment:
Q  50 caccaaccgaaccgagccgaaccgcacatattttattttttggatcggatcactttttgcctcgtacccgagccgaaccgc 130  Q
    |||||||||||| |||||||||||||||| |||||  ||||||||||| |||||||||||||| || ||||||||||||||    
T  19351506 caccaaccgaactgagccgaaccgcacatgttttacattttggatcggttcactttttgcctcataaccgagccgaaccgc 19351586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 480 - 560
Target Start/End: Complemental strand, 43464833 - 43464753
Alignment:
Q  480 cctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataaacgccgacgccaca 560  Q
    ||||||||||||| || || | |||||| ||||||||||||||  ||||||||||||| ||||| ||||| ||||||||||    
T  43464833 cctgcaaaacaatgttgtgaagtaacactgaacactccctcacactctcctcctcccacgccaacaaacgacgacgccaca 43464753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 442 - 560
Target Start/End: Complemental strand, 34423875 - 34423757
Alignment:
Q  442 aggatctaacaaccagcgccaagtatcattggtattttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagcc 541  Q
    ||||||||| ||||| ||||||| ||| |    |||||||||||||||||| |||| || ||| ||| | |||||||||||  |||||||||||||||||    
T  34423875 aggatctaataaccaacgccaagcatcgtgaacattttcctgcaaaacaatgttatatagtaaaacatagcactccctcacactctcctcctcccaagcc 34423776  T
Q  542 aataaacgccgacgccaca 560  Q
    || || || || |||||||    
T  34423775 aacaaccgacggcgccaca 34423757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 475 - 560
Target Start/End: Original strand, 22033838 - 22033923
Alignment:
Q  475 attttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataaacgccgacgccaca 560  Q
    |||||||||||||||||| ||||| |  || ||||| |||||||||||  |||||||||||||||| || || |||| ||||||||    
T  22033838 attttcctgcaaaacaatgttatgaagaaaaacagagcactccctcacactctcctcctcccaagcaaacaatcgccaacgccaca 22033923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 431 - 542
Target Start/End: Complemental strand, 12237643 - 12237532
Alignment:
Q  431 taaccatgggaaggatctaacaaccagcgccaagtatcattggtattttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcct 530  Q
    |||||||| ||||||| ||| ||||| | |||||||||||  |  ||||| ||||||||||| ||| | | ||||   ||||||||||||||  ||||||    
T  12237643 taaccatgagaaggatgtaataaccatctccaagtatcatgagcgttttcttgcaaaacaatgttaagaagtaacgttgaacactccctcacactctcct 12237544  T
Q  531 cctcccaagcca 542  Q
    ||||||||||||    
T  12237543 cctcccaagcca 12237532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 477 - 560
Target Start/End: Original strand, 41913950 - 41914033
Alignment:
Q  477 tttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataaacgccgacgccaca 560  Q
    ||||||| || ||||| ||||| | ||||| |||||||||||||||  ||||||||||||| || || ||||| ||||||||||    
T  41913950 tttcctgaaacacaatgttatgaagtaacatagaacactccctcacgctctcctcctcccatgcaaacaaacgtcgacgccaca 41914033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 480 - 537
Target Start/End: Complemental strand, 41778640 - 41778583
Alignment:
Q  480 cctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctccca 537  Q
    ||||||||||||| |||||||| || ||| |||| |||||||||| ||||||||||||    
T  41778640 cctgcaaaacaatgttatgtaacaatacaaaacattccctcacttcctcctcctccca 41778583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 143 - 560
Target Start/End: Original strand, 12726182 - 12726599
Alignment:
Q  143 cctagccatagccaaacctgataccaaagggaaccaaagacttcacactccaaaaataaatgtgttgttgtttcgtggctgcgacaaccatacacacaaa 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||    
T  12726182 cctagccatagccaaacctgataccaaagggaaccaaagacttcacactccaaaaataaatgtgttgctgtttcgtggctgccacaaccagacacacaaa 12726281  T
Q  243 atgcttcctcatgagatagagccctccgcctcaccaaattgtccttggttggaagtctattgcgaagaaggcgccacacgaatactaacaccttagaagg 342  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  12726282 atgcttcctcatgagatagagccctctgcctcaccaaattgtccttggttggaagtctattgcgaagaaggcgccacacgaacactgacaccttagaagg 12726381  T
Q  343 aatttgcttatgccaaatgtcgtc-gactagggacctatccaccaactcatcagaattagtgagaaattggtaagctccccacaccgaataaccatggga 441  Q
    ||| || | ||||||||| ||| |  |||| |||||| |||  ||||||    | | ||||||||||  ||||||| ||   ||  ||||| ||||| |     
T  12726382 aatatgttgatgccaaatatcgacaaacta-ggacctgtccgtcaactcggtcgtagtagtgagaaaacggtaagccccatgcatagaatatccatgagt 12726480  T
Q  442 aggatctaacaaccagcgccaagtatcattggtattttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagcc 541  Q
    | | |||| ||||||   ||||||||| | |  || |||||| |||||||||||||| | ||||| | |||||||||||||  ||||||||||||| |||    
T  12726481 acggtctagcaaccacttccaagtatcttcgacatgttcctgaaaaacaatattatggagtaacataaaacactccctcacactctcctcctcccacgcc 12726580  T
Q  542 aataaacgccgacgccaca 560  Q
    || ||||| ||||||||||    
T  12726581 aacaaacgtcgacgccaca 12726599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 272 - 560
Target Start/End: Complemental strand, 46218976 - 46218688
Alignment:
Q  272 ctcaccaaattgtccttggttggaagtctattgcgaagaaggcgccacacgaatactaacaccttagaaggaatttgcttatgccaaatgtcgtcgacta 371  Q
    ||||||||||||| |||||| |||||||| ||||||| ||| ||||||||||| |   ||||||| || | ||| || | |||||||||||| |||||||    
T  46218976 ctcaccaaattgttcttggtgggaagtctgttgcgaaaaagtcgccacacgaacaaagacacctttgaggaaatatgttgatgccaaatgtcatcgacta 46218877  T
Q  372 gggacctatccaccaactcatcagaattagtgagaaattggtaagctccccacaccgaataaccatgggaaggatctaacaaccagcgccaagtatcatt 471  Q
    | |||||||||||||||||  | ||||||||||||||  | || |||||||||||  |||||||||| |||||||||||||||||  |||||  ||||||    
T  46218876 gagacctatccaccaactctccggaattagtgagaaagcgatacgctccccacactaaataaccatgagaaggatctaacaaccactgccaaacatcatt 46218777  T
Q  472 ggtattttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataaacgccgacgccaca 560  Q
    |  |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||    
T  46218776 gacattttcctgcaaaacaatgttatgtaataacacagaacactccctcacattctcctcctcccaagccagtaaacgacgacgccaca 46218688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 475 - 602
Target Start/End: Original strand, 19497970 - 19498097
Alignment:
Q  475 attttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataaacgccgacgccacatacctcccccttca 574  Q
    |||||||||||||||||  ||||| | ||| |||  ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19497970 attttcctgcaaaacaacgttatgaagtaaaacaacacactccctcacactctcctcctcccaagccaataaacgccgacgccacatacctcccccttca 19498069  T
Q  575 ccatctgctcccaagatcctcatcatat 602  Q
    ||||| ||||||||||||| ||||||||    
T  19498070 ccatccgctcccaagatccacatcatat 19498097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 51 - 146
Target Start/End: Complemental strand, 44720749 - 44720654
Alignment:
Q  51 accaaccgaaccgagccgaaccgcacatattttattttttggatcggatcactttttgcctcgtacccgagccgaaccgcactgcgaacaccccta 146  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || |||| ||||||||||| |||||||||||||    
T  44720749 accaatcgaaccgagccgaaccgcacatattttattttttggatcggttcactttttgcttcataaccgaaccgaaccgcaccgcgaacaccccta 44720654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 48 - 148
Target Start/End: Original strand, 19615105 - 19615205
Alignment:
Q  48 agcaccaaccgaaccgagccgaaccgcacatattttattttttggatcggatcactttttgcctcgtacccgagccgaaccgcactgcgaacacccctag 147  Q
    |||| ||||||||||||||||||| ||| || ||| |||||||||||||| |||||||||||||| || |||||||||||||||| ||||||||||||||    
T  19615105 agcaacaaccgaaccgagccgaactgcatatgtttgattttttggatcggttcactttttgcctcataaccgagccgaaccgcaccgcgaacacccctag 19615204  T
Q  148 c 148  Q
    |    
T  19615205 c 19615205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 48 - 142
Target Start/End: Original strand, 34723745 - 34723839
Alignment:
Q  48 agcaccaaccgaaccgagccgaaccgcacatattttattttttggatcggatcactttttgcctcgtacccgagccgaaccgcactgcgaacacc 142  Q
    ||||||||||||||||||| ||| |||| || |||||||||||||||||  |||||||||||||| || |||||||||||||||| |||||||||    
T  34723745 agcaccaaccgaaccgagctgaatcgcatatgttttattttttggatcgattcactttttgcctcataaccgagccgaaccgcaccgcgaacacc 34723839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 475 - 560
Target Start/End: Original strand, 54846163 - 54846248
Alignment:
Q  475 attttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataaacgccgacgccaca 560  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||||||  ||||||||||||||||||| || || ||||||||||    
T  54846163 attttcctgcaaaacaatgttatgtagtaaaacagaacactccctcacactctcctcctcccaagccaacaatcgacgacgccaca 54846248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 478 - 560
Target Start/End: Original strand, 7705168 - 7705250
Alignment:
Q  478 ttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataaacgccgacgccaca 560  Q
    ||||| ||||||||| ||||||| |||| || ||||||||||||||  |||||||||||| ||||||||||| || |||||||    
T  7705168 ttccttcaaaacaatgttatgtagtaactcaaaacactccctcactccctcctcctcccacgccaataaacgtcgccgccaca 7705250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 10820032 - 10819984
Alignment:
Q  61 ccgagccgaaccgcacatattttattttttggatcggatcactttttgc 109  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  10820032 ccgacccgaaccgcacatattttattttttagatcggatcactttttgc 10819984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 479 - 560
Target Start/End: Original strand, 50609444 - 50609525
Alignment:
Q  479 tcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataaacgccgacgccaca 560  Q
    |||||||||||||| ||||| ||||| || ||||||||||||||  | ||||||||||| ||||| ||||| || |||||||    
T  50609444 tcctgcaaaacaatgttatgaaataaaactgaacactccctcacactttcctcctcccaggccaacaaacgtcgtcgccaca 50609525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 560
Target Start/End: Complemental strand, 12833032 - 12832914
Alignment:
Q  442 aggatctaacaaccagcgccaagtatcattggtattttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagcc 541  Q
    ||||||||||||||| ||||| | ||| |    |||||||||||||||||| |||| ||||||    | ||||||||||||  ||||||||||||| |||    
T  12833032 aggatctaacaaccaacgccaggcatcgtgcacattttcctgcaaaacaatgttatctaataaagttgcacactccctcacactctcctcctcccacgcc 12832933  T
Q  542 aataaacgccgacgccaca 560  Q
    || || || ||||||||||    
T  12832932 aacaaccgacgacgccaca 12832914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 518
Target Start/End: Original strand, 25057282 - 25057380
Alignment:
Q  420 cccacaccgaataaccatgggaaggatctaacaaccagcgccaagtatcattggtattttcctgcaaaacaatattatgtaataacacagaacactccc 518  Q
    ||||||| ||||| |||||   |||||||||||||||   |||||| |||||   |||||||||||||| ||| ||||||||||| | |||||||||||    
T  25057282 cccacactgaatagccatgaataggatctaacaaccatttccaagtgtcattaacattttcctgcaaaataatgttatgtaataaaagagaacactccc 25057380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 401 - 501
Target Start/End: Original strand, 46610023 - 46610123
Alignment:
Q  401 gtgagaaattggtaagctccccacaccgaataaccatgggaaggatctaacaaccagcgccaagtatcattggtattttcctgcaaaacaatattatgta 500  Q
    |||||||| ||||||||| ||| |||||  |||||||| ||||||| ||  ||||| | |||||| ||||  | |||||||||||||||||| ||| |||    
T  46610023 gtgagaaagtggtaagcttcccgcaccgtgtaaccatgagaaggatgtagtaaccacctccaagtgtcatgagcattttcctgcaaaacaatgttaagta 46610122  T
Q  501 a 501  Q
    |    
T  46610123 a 46610123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 522
Target Start/End: Original strand, 12377462 - 12377505
Alignment:
Q  479 tcctgcaaaacaatattatgtaataacacagaacactccctcac 522  Q
    |||||||||||||| |||||||||| || |||||||||||||||    
T  12377462 tcctgcaaaacaatgttatgtaatagcaaagaacactccctcac 12377505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 476 - 546
Target Start/End: Original strand, 6519476 - 6519545
Alignment:
Q  476 ttttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataa 546  Q
    ||||||||||||||| ||||| | | |||| | |||||||||||||| || ||||||||||| ||||||||    
T  6519476 ttttcctgcaaaacagtattaagaagtaacgctgaacactccctcacatt-tcctcctcccacgccaataa 6519545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 275 - 345
Target Start/End: Original strand, 7704965 - 7705035
Alignment:
Q  275 accaaattgtccttggttggaagtctattgcgaagaaggcgccacacgaatactaacaccttagaaggaat 345  Q
    |||| ||| ||||| ||||| ||||| ||||||||||||||||| ||||| ||  ||||||| ||||||||    
T  7704965 accagattatcctttgttgggagtctgttgcgaagaaggcgccaaacgaacacagacacctttgaaggaat 7705035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 25317415 - 25317346
Alignment:
Q  144 ctagccatagccaaacctgataccaaagggaaccaaagacttcacactccaaaaataaatgtgttgttgtttc 216  Q
    ||||||| |||||||||| | |||||||||| ||   ||| |||||  |||||||||||||||||||||||||    
T  25317415 ctagccaaagccaaaccttagaccaaagggatcc---gacgtcacatcccaaaaataaatgtgttgttgtttc 25317346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 535
Target Start/End: Original strand, 32227269 - 32227326
Alignment:
Q  478 ttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcc 535  Q
    |||||| |||||||  ||||| | |||||||||||||||||||||  |||||||||||    
T  32227269 ttcctgaaaaacaaagttatgaagtaacacagaacactccctcacgctctcctcctcc 32227326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 475 - 519
Target Start/End: Original strand, 30567311 - 30567355
Alignment:
Q  475 attttcctgcaaaacaatattatgtaataacacagaacactccct 519  Q
    |||||||||||| ||||| ||||||||||| | ||||||||||||    
T  30567311 attttcctgcaacacaatgttatgtaataaaagagaacactccct 30567355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 276 - 320
Target Start/End: Complemental strand, 41147620 - 41147576
Alignment:
Q  276 ccaaattgtccttggttggaagtctattgcgaagaaggcgccaca 320  Q
    |||||||||| || |||| || |||||||||||||||||||||||    
T  41147620 ccaaattgtctttcgttgaaattctattgcgaagaaggcgccaca 41147576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 3e-74; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 341 - 558
Target Start/End: Complemental strand, 13215446 - 13215229
Alignment:
Q  341 ggaatttgcttatgccaaatgtcgtcgactagggacctatccaccaactcatcagaattagtgagaaattggtaagctccccacaccgaataaccatggg 440  Q
    ||||||||||||||||||  | |||| ||||||||||||||||||||||||   |||||||||||||| || |||||||||| |||||| ||||  ||||    
T  13215446 ggaatttgcttatgccaagcgacgtctactagggacctatccaccaactcacttgaattagtgagaaagtgataagctccccgcaccgagtaactgtggg 13215347  T
Q  441 aaggatctaacaaccagcgccaagtatcattggtattttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagc 540  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||    
T  13215346 aaggatctaacaaccagcgccaaatatcattggtattttcatgcaaaacaatattatgtaataacatagaacactccgttactttctcctcctcccaagc 13215247  T
Q  541 caataaacgccgacgcca 558  Q
    ||||||||| ||||||||    
T  13215246 caataaacgacgacgcca 13215229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 272 - 548
Target Start/End: Complemental strand, 9312889 - 9312613
Alignment:
Q  272 ctcaccaaattgtccttggttggaagtctattgcgaagaaggcgccacacgaatactaacaccttagaaggaatttgcttatgccaaatgtcgtcgacta 371  Q
    ||||||||||||||||  || |||||||| | ||||||||||||||||||||| |   ||||||| || ||||| || ||||| ||||||||||||||||    
T  9312889 ctcaccaaattgtcctcagtgggaagtctttcgcgaagaaggcgccacacgaacaaagacacctttgagggaatatgtttatgtcaaatgtcgtcgacta 9312790  T
Q  372 gggacctatccaccaactcatcagaattagtgagaaattggtaagctccccacaccgaataaccatgggaaggatctaacaaccagcgccaagtatcatt 471  Q
    | ||||| ||||||| ||| || || |||||||||||  | ||||||| || || |||||||||||||| ||| ||||||||||| ||||||| ||||||    
T  9312789 gagacctgtccaccatctcgtcggagttagtgagaaagcgataagctctccgcatcgaataaccatgggtagggtctaacaaccaacgccaagcatcatt 9312690  T
Q  472 ggtattttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataaac 548  Q
    |  |||||| |||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||    
T  9312689 gacattttcttgcaaaacaatattatgtaataacacggagcactccctcacattctcctcctcccaagccaataaac 9312613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 272 - 560
Target Start/End: Complemental strand, 2683574 - 2683286
Alignment:
Q  272 ctcaccaaattgtccttggttggaagtctattgcgaagaaggcgccacacgaatactaacaccttagaaggaatttgcttatgccaaatgtcgtcgacta 371  Q
    |||| ||||||| ||||||| |||||||| | ||| ||||||| |||||| || |   |||||||||||| ||| |||| |||| ||||||| |||||||    
T  2683574 ctcatcaaattgaccttggtaggaagtctgtcgcggagaaggcaccacacaaacaaagacaccttagaagtaatatgctgatgcgaaatgtcatcgacta 2683475  T
Q  372 gggacctatccaccaactcatcagaattagtgagaaattggtaagctccccacaccgaataaccatgggaaggatctaacaaccagcgccaagtatcatt 471  Q
    | |||||||||||||||||| |  |||||||||||||  | || ||||||| | |  ||||||||   ||||||||||||||||| || || ||||| ||    
T  2683474 gagacctatccaccaactcaccgaaattagtgagaaagcgatatgctccccgcgctaaataaccactagaaggatctaacaaccaccgtcatgtatcctt 2683375  T
Q  472 ggtattttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataaacgccgacgccaca 560  Q
    |  ||| ||||||||||||||||||| ||| ||||||||||||||||||||  ||||||||||| |||| | |||||| ||||||||||    
T  2683374 gacattatcctgcaaaacaatattatataacaacacagaacactccctcacactctcctcctcctaagcaagtaaacgacgacgccaca 2683286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 51 - 146
Target Start/End: Complemental strand, 12853163 - 12853068
Alignment:
Q  51 accaaccgaaccgagccgaaccgcacatattttattttttggatcggatcactttttgcctcgtacccgagccgaaccgcactgcgaacaccccta 146  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||| || ||||| |||||||||| |||||||||||||    
T  12853163 accaaccgaaccgagccgaaccgcacatgttttactttttggatcggttcactttttgcctcataaccgagtcgaaccgcaccgcgaacaccccta 12853068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 275 - 364
Target Start/End: Original strand, 23286897 - 23286986
Alignment:
Q  275 accaaattgtccttggttggaagtctattgcgaagaaggcgccacacgaatactaacaccttagaaggaatttgcttatgccaaatgtcg 364  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||| || ||  |||||||||||||||| | || |||||||||||||    
T  23286897 accaaattatccttagttggaagtctattgcgaagaaggcgccacacaaacaccgacaccttagaaggaatctcctgatgccaaatgtcg 23286986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 442 - 537
Target Start/End: Original strand, 14392809 - 14392903
Alignment:
Q  442 aggatctaacaaccagcgccaagtatcattggtattttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctccca 537  Q
    ||||||||||||||| | ||||||||||| |   ||||||||||||||||  ||||| | |||||||||||||||||||||  |||||||||||||    
T  14392809 aggatctaacaaccacctccaagtatcat-gaacttttcctgcaaaacaacgttatgaagtaacacagaacactccctcacactctcctcctccca 14392903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 475 - 560
Target Start/End: Complemental strand, 32159647 - 32159561
Alignment:
Q  475 attttcctgcaaaacaatattatgtaataaca-cagaacactccctcactttctcctcctcccaagccaataaacgccgacgccaca 560  Q
    |||||||||||| ||||| ||||||||||| | |||| |||||||||||  ||||||||||| | |||||||||||| ||| |||||    
T  32159647 attttcctgcaacacaatgttatgtaataaaaacagagcactccctcacactctcctcctcctaggccaataaacgcagacaccaca 32159561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 425 - 537
Target Start/End: Original strand, 21605741 - 21605853
Alignment:
Q  425 accgaataaccatgggaaggatctaacaaccagcgccaagtatcattggtattttcctgcaaaacaatattatgtaataacacagaacactccctcactt 524  Q
    |||||||||||||||| ||| ||||||  ||| ||||||| |||||| |   ||||||||||||||| |||| | |  || ||||||||||||| |||      
T  21605741 accgaataaccatgggtagggtctaactgccatcgccaagaatcattcgatgtttcctgcaaaacaagattaagaagcaaaacagaacactcccccacac 21605840  T
Q  525 tctcctcctccca 537  Q
    |||||||||||||    
T  21605841 tctcctcctccca 21605853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 486 - 560
Target Start/End: Original strand, 23287106 - 23287180
Alignment:
Q  486 aaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataaacgccgacgccaca 560  Q
    ||||||  ||||| | ||||||||||||||| |||||  |||||||||||||||| || ||||| ||||||||||    
T  23287106 aaacaaagttatgaagtaacacagaacactcgctcacgctctcctcctcccaagcaaacaaacgtcgacgccaca 23287180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 479 - 560
Target Start/End: Original strand, 17738372 - 17738453
Alignment:
Q  479 tcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataaacgccgacgccaca 560  Q
    |||||||||||||| || || | ||| ||| |||||||||||||  ||||||||||||| ||||| ||||| || |||||||    
T  17738372 tcctgcaaaacaatgttgtgaagtaaaacaaaacactccctcacactctcctcctcccaggccaacaaacgtcgccgccaca 17738453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 474 - 537
Target Start/End: Complemental strand, 2013521 - 2013458
Alignment:
Q  474 tattttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctccca 537  Q
    |||| |||||||||||||  |||||||| || ||||||||||||||||   |||||||||||||    
T  2013521 tattatcctgcaaaacaacgttatgtaacaaaacagaacactccctcatactctcctcctccca 2013458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 509 - 560
Target Start/End: Original strand, 17798710 - 17798761
Alignment:
Q  509 gaacactccctcactttctcctcctcccaagccaataaacgccgacgccaca 560  Q
    ||||||||||||||  ||||||||||||||||||| |||||||  |||||||    
T  17798710 gaacactccctcacactctcctcctcccaagccaacaaacgccttcgccaca 17798761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 479 - 517
Target Start/End: Original strand, 29071890 - 29071928
Alignment:
Q  479 tcctgcaaaacaatattatgtaataacacagaacactcc 517  Q
    ||||||||||||||||| |||||||||| ||||||||||    
T  29071890 tcctgcaaaacaatattttgtaataacaaagaacactcc 29071928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 479 - 517
Target Start/End: Original strand, 29104463 - 29104501
Alignment:
Q  479 tcctgcaaaacaatattatgtaataacacagaacactcc 517  Q
    ||||||||||||||||| |||||||||| ||||||||||    
T  29104463 tcctgcaaaacaatattttgtaataacaaagaacactcc 29104501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 404 - 540
Target Start/End: Complemental strand, 28591005 - 28590869
Alignment:
Q  404 agaaattggtaagctccccacaccgaataaccatgggaaggatctaacaaccagcgccaagtatcattggtattttcctgcaaaacaatattatgtaata 503  Q
    ||||| ||||| ||||||| ||| |||||| | ||   ||||||||||  ||| | | |||||||| | ||||| |||||||||||||  ||||||||||    
T  28591005 agaaagtggtatgctccccgcactgaataagcctgaataggatctaactgccacctcgaagtatcaatagtattctcctgcaaaacaacgttatgtaata 28590906  T
Q  504 acacagaacactccctcactttctcctcctcccaagc 540  Q
    |    |||||||||| |||  | ||||||||||||||    
T  28590905 aatttgaacactcccccacactatcctcctcccaagc 28590869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 32159853 - 32159801
Alignment:
Q  269 cgcctcaccaaattgtccttggttggaagtctattgcgaagaaggcgccacac 321  Q
    |||| |||||| ||||| || |||| ||||||||||||||||||| |||||||    
T  32159853 cgccgcaccaagttgtcttttgttgaaagtctattgcgaagaaggtgccacac 32159801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 274 - 560
Target Start/End: Original strand, 21376055 - 21376341
Alignment:
Q  274 caccaaattgtccttggttggaagtctattgcgaagaaggcgccacacgaatactaacaccttagaaggaatttgcttatgccaaatgtcgtcgactagg 373  Q
    ||||||||| ||||||||||||||||| ||| |||| |||||||||||||| ||  ||||||||||||| || |||||| ||||||||||| | ||| ||    
T  21376055 caccaaattatccttggttggaagtctgttgtgaagtaggcgccacacgaacacatacaccttagaagggatatgcttaggccaaatgtcgacaacttgg 21376154  T
Q  374 gacctatccaccaactcatcagaattagtgagaaattggtaagctccccacaccgaataaccatgggaaggatctaacaaccagcgccaagtatcattgg 473  Q
    |||||||||||||||||| | ||  |||| |||||    ||||| ||||  |||||||| |||||    |||||||||| ||| | ||||||||| | |     
T  21376155 gacctatccaccaactcacctgagatagtaagaaagcaataagccccccgaaccgaatatccatgaattggatctaacagccacctccaagtatcttcga 21376254  T
Q  474 tattttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataaacgccgacgccaca 560  Q
     |||||||||||||||| | ||||| | ||||||||||||||||||||| |||||||||||||| ||||||||| | ||||||||||    
T  21376255 cattttcctgcaaaacattgttatgaagtaacacagaacactccctcacattctcctcctcccatgccaataaatgtcgacgccaca 21376341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 341 - 560
Target Start/End: Complemental strand, 13063878 - 13063659
Alignment:
Q  341 ggaatttgcttatgccaaatgtcgtcgactagggacctatccaccaactcatcagaattagtgagaaattggtaagctccccacaccgaataaccatggg 440  Q
    ||||||||||||||||||||||| || ||||  | || ||||||||||||| | ||||||||||||||  |||||||||||| ||||||||| ||||| |    
T  13063878 ggaatttgcttatgccaaatgtcttcaactaatgtccgatccaccaactcacctgaattagtgagaaagcggtaagctccccgcaccgaatacccatgag 13063779  T
Q  441 aaggatctaacaaccagcgccaagtatcattggtattttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagc 540  Q
     |||||| | |||||| ||||||  |||| || ||||||||||||||||||| |||||||||||||||||||||||| ||||  ||||||||||||| ||    
T  13063778 caggatcaagcaaccaacgccaatcatcactgatattttcctgcaaaacaatgttatgtaataacacagaacactccatcacactctcctcctcccacgc 13063679  T
Q  541 caataaacgccgacgccaca 560  Q
    || |||||| || |||||||    
T  13063678 cattaaacgacggcgccaca 13063659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 269 - 560
Target Start/End: Original strand, 44362518 - 44362809
Alignment:
Q  269 cgcctcaccaaattgtccttggttggaagtctattgcgaagaaggcgccacacgaatactaacaccttagaaggaatttgcttatgccaaatgtcgtcga 368  Q
    ||||||||||| ||||| || || |||||||| | ||||||||||||||| || |  |   || |||| || |||||||||||||||||||||||||| |    
T  44362518 cgcctcaccaagttgtctttagtgggaagtctgtcgcgaagaaggcgccaaaccatcagagacgcctttgagggaatttgcttatgccaaatgtcgtcaa 44362617  T
Q  369 ctagggacctatccaccaactcatcagaattagtgagaaattggtaagctccccacaccgaataaccatgggaaggatctaacaaccagcgccaagtatc 468  Q
    |||  | || ||||||||||||  |  || ||||||||||  |||||||||||| ||||||||| ||||| |||||||| |  | ||| || |||  |||    
T  44362618 ctaacgtccgatccaccaactcgccttaagtagtgagaaagcggtaagctccccgcaccgaatacccatgagaaggatcaagaagccaacgtcaatcatc 44362717  T
Q  469 attggtattttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataaacgccgacgccaca 560  Q
    | || ||||||||||||||||||| |||||||||||||||||||||||| ||||  ||||||||||||| |||| |||||| ||||||||||    
T  44362718 actgatattttcctgcaaaacaatgttatgtaataacacagaacactccatcacactctcctcctcccacgccattaaacgacgacgccaca 44362809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 475 - 614
Target Start/End: Original strand, 31396022 - 31396161
Alignment:
Q  475 attttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataaacgccgacgccacatacctcccccttca 574  Q
    |||||||||||||||||  || || ||||| |||  ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31396022 attttcctgcaaaacaacgttgtgaaataaaacaacacactccctcacactctcctcctcccaagccaataaacgccgacgccacatacctcccccttca 31396121  T
Q  575 ccatctgctcccaagatcctcatcatatccaacaccaaac 614  Q
    ||||| ||||||||||||||||||||||||| ||||||||    
T  31396122 ccatccgctcccaagatcctcatcatatccaccaccaaac 31396161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 48 - 146
Target Start/End: Original strand, 7137931 - 7138029
Alignment:
Q  48 agcaccaaccgaaccgagccgaaccgcacatattttattttttggatcggatcactttttgcctcgtacccgagccgaaccgcactgcgaacaccccta 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||| |||||||||||||    
T  7137931 agcaccaaccgaaccgagccgaaccgcacatattttattttttggatcggttcactttttgcctcataaccgagccgaaccgcaccgcgaacaccccta 7138029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 51 - 146
Target Start/End: Original strand, 43306239 - 43306335
Alignment:
Q  51 accaaccgaaccgagccgaaccgcacatattttatttt-ttggatcggatcactttttgcctcgtacccgagccgaaccgcactgcgaacaccccta 146  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||| || || ||||| |||||||||| |||||||||||||    
T  43306239 accaaccgaaccgaaccgaaccgcacatattttatttttttggatcggttcactttttgcttcataaccgagacgaaccgcaccgcgaacaccccta 43306335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 40352261 - 40352199
Alignment:
Q  47 aagcaccaaccgaaccgagccgaaccgcacatattttattttttggatcggatcactttttgc 109  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40352261 aagcaccaaccaaaccgagccgaaccgcacatattttattttttggatcagatcactttttgc 40352199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 438
Target Start/End: Original strand, 39464412 - 39464572
Alignment:
Q  278 aaattgtccttggttggaagtctattgcgaagaaggcgccacacgaatactaacaccttagaaggaatttgcttatgccaaatgtcgtcgactagggacc 377  Q
    ||||||||||||||||||||||| ||| ||||||||||||| ||||| ||  ||||||| || ||||| |  |||||||||||||||   ||  | | ||    
T  39464412 aaattgtccttggttggaagtctgttgtgaagaaggcgccaaacgaacacagacaccttggatggaatattattatgccaaatgtcgagaacctgaggcc 39464511  T
Q  378 tatccaccaactcatcagaattagtgagaaattggtaagctccccacaccgaataaccatg 438  Q
    || || |||||||| | ||| | ||||||||  |||||||  ||| |||||||||||||||    
T  39464512 taaccgccaactcaactgaagttgtgagaaagcggtaagccacccgcaccgaataaccatg 39464572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 27000434 - 27000382
Alignment:
Q  269 cgcctcaccaaattgtccttggttggaagtctattgcgaagaaggcgccacac 321  Q
    ||||||| |||||||||||||||||||||||| ||||||||||| ||||||||    
T  27000434 cgcctcaacaaattgtccttggttggaagtctgttgcgaagaagacgccacac 27000382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 66 - 144
Target Start/End: Original strand, 40023132 - 40023212
Alignment:
Q  66 ccgaaccgcacatattttatttt--ttggatcggatcactttttgcctcgtacccgagccgaaccgcactgcgaacacccc 144  Q
    |||||||| ||||||||||||||  ||||||||| ||| |||||||||| ||  ||||||||||||||| ||||| |||||    
T  40023132 ccgaaccgtacatattttattttttttggatcggttcaatttttgcctcataatcgagccgaaccgcaccgcgaagacccc 40023212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 275 - 347
Target Start/End: Original strand, 31395823 - 31395895
Alignment:
Q  275 accaaattgtccttggttggaagtctattgcgaagaaggcgccacacgaatactaacaccttagaaggaattt 347  Q
    ||||| ||||| || ||||||| |||||||||||||||||||||||| || |  |||||||| ||||| ||||    
T  31395823 accaagttgtcttttgttggaattctattgcgaagaaggcgccacacaaacaaaaacacctttgaagggattt 31395895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 543
Target Start/End: Original strand, 18132739 - 18132822
Alignment:
Q  460 ccaagtatcattggtattttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaa 543  Q
    |||||||||||  ||||  ||||||||||||   ||||| ||||| ||| |||||||||||||  ||||||||||||| |||||    
T  18132739 ccaagtatcatgagtatggtcctgcaaaacatcgttatgcaataaaacaaaacactccctcacactctcctcctcccacgccaa 18132822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 543
Target Start/End: Original strand, 18144526 - 18144609
Alignment:
Q  460 ccaagtatcattggtattttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaa 543  Q
    |||||||||||  ||||  ||||||||||||   ||||| ||||| ||| |||||||||||||  ||||||||||||| |||||    
T  18144526 ccaagtatcatgagtatggtcctgcaaaacatcgttatgcaataaaacaaaacactccctcacactctcctcctcccacgccaa 18144609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 540
Target Start/End: Original strand, 47801080 - 47801327
Alignment:
Q  293 ggaagtctattgcgaagaaggcgccacacgaatactaacaccttagaaggaatttgcttatgccaaatgtcgtcgactagggacctatccaccaactcat 392  Q
    ||||||||||||||||| || |||||  | || |   ||||||| ||||| || || |||||||| | ||| || || || | |||||||||||  |||     
T  47801080 ggaagtctattgcgaaggagtcgccaagccaagagagacacctttgaagggatatgtttatgccatacgtcatccacaagagtcctatccaccatgtcac 47801179  T
Q  393 cagaattagtgagaaattggtaagctccccacaccgaataaccatgggaaggatctaacaaccagcgccaagtatcattggtattttcctgcaaaacaat 492  Q
    | |||| ||| | |||  |||| ||| ||||||| |||||||||||   | ||||||| ||||| | |||||| ||  ||  ||| ||||||||||||||    
T  47801180 ctgaatgagtaacaaaccggtaggcttcccacactgaataaccatgaatatgatctaaaaaccacctccaagtgtcgctgacattatcctgcaaaacaat 47801279  T
Q  493 attatgtaataacacagaacactccctcactttctcctcctcccaagc 540  Q
     ||||||||||  | ||| || ||||||||  | ||||||||||||||    
T  47801280 gttatgtaatagaatagagcattccctcacactttcctcctcccaagc 47801327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 479 - 537
Target Start/End: Complemental strand, 6800305 - 6800247
Alignment:
Q  479 tcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctccca 537  Q
    |||||||||||||| |||||||||| || ||||| ||||||||| |  |||||||||||    
T  6800305 tcctgcaaaacaatgttatgtaatagcaaagaacgctccctcacatattcctcctccca 6800247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 266 - 318
Target Start/End: Original strand, 23761833 - 23761885
Alignment:
Q  266 ctccgcctcaccaaattgtccttggttggaagtctattgcgaagaaggcgcca 318  Q
    ||||||| ||||||||||||||| |||| |||||| |||| ||| ||||||||    
T  23761833 ctccgccgcaccaaattgtccttagttgaaagtctgttgcaaaggaggcgcca 23761885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 480 - 560
Target Start/End: Complemental strand, 25987738 - 25987658
Alignment:
Q  480 cctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataaacgccgacgccaca 560  Q
    |||| |||||||  ||||||||||| |   |||||||||||||  |||||||||||||||| || |||||||  |||||||    
T  25987738 cctgtaaaacaaagttatgtaataatagtaaacactccctcacactctcctcctcccaagctaacaaacgccttcgccaca 25987658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 4e-49; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 269 - 560
Target Start/End: Complemental strand, 20129553 - 20129262
Alignment:
Q  269 cgcctcaccaaattgtccttggttggaagtctattgcgaagaaggcgccacacgaatactaacaccttagaaggaatttgcttatgccaaatgtcgtcga 368  Q
    ||||||||||| ||||| || || |||||||| | ||||||||||||||| || |  |   || |||| || |||||||||||||||||||||||||| |    
T  20129553 cgcctcaccaagttgtctttagtgggaagtctgtcgcgaagaaggcgccaaaccatcagagacgcctttgagggaatttgcttatgccaaatgtcgtcaa 20129454  T
Q  369 ctagggacctatccaccaactcatcagaattagtgagaaattggtaagctccccacaccgaataaccatgggaaggatctaacaaccagcgccaagtatc 468  Q
    |||  | || ||||||||||||  |  || ||||||||||  |||||||||||| ||||||||| ||||| |||||||| |  | ||| || |||  |||    
T  20129453 ctaacgtccgatccaccaactcgccttaagtagtgagaaagcggtaagctccccgcaccgaatacccatgagaaggatcaagaagccaacgtcaatcatc 20129354  T
Q  469 attggtattttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataaacgccgacgccaca 560  Q
    | || ||||||||||||||||||| |||||||||||||||||||||||| ||||  ||||||||||||| |||| |||||| ||||||||||    
T  20129353 actgatattttcctgcaaaacaatgttatgtaataacacagaacactccatcacactctcctcctcccacgccattaaacgacgacgccaca 20129262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 48 - 146
Target Start/End: Complemental strand, 11661062 - 11660964
Alignment:
Q  48 agcaccaaccgaaccgagccgaaccgcacatattttattttttggatcggatcactttttgcctcgtacccgagccgaaccgcactgcgaacaccccta 146  Q
    |||||||||||||||||||||||||||| || ||| |||||||||||||| |||||||||||||| || |||||||||||||||| |||||||||||||    
T  11661062 agcaccaaccgaaccgagccgaaccgcatatgtttgattttttggatcggttcactttttgcctcataaccgagccgaaccgcaccgcgaacaccccta 11660964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 476 - 558
Target Start/End: Complemental strand, 25109612 - 25109530
Alignment:
Q  476 ttttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataaacgccgacgcca 558  Q
    |||||||| |||||||| ||||| |||||||||  ||||||||||||  ||||||||||||| ||||||||||| ||||||||    
T  25109612 ttttcctgtaaaacaatgttatgaaataacacaagacactccctcacactctcctcctcccacgccaataaacgacgacgcca 25109530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 24948396 - 24948471
Alignment:
Q  66 ccgaaccgcacatattttattttttggatcggatcactttttgcctcgtacccgagccgaaccgcactgcgaacac 141  Q
    ||||||| ||||| ||||| |||||||||||| |||||||||||||| || |||||||||||| ||| ||||||||    
T  24948396 ccgaaccacacatgttttactttttggatcggttcactttttgcctcataaccgagccgaaccacaccgcgaacac 24948471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 266 - 318
Target Start/End: Complemental strand, 5513435 - 5513383
Alignment:
Q  266 ctccgcctcaccaaattgtccttggttggaagtctattgcgaagaaggcgcca 318  Q
    ||||||| || |||||||||||||||||||||||| |||||||||||||||||    
T  5513435 ctccgccgcaacaaattgtccttggttggaagtctgttgcgaagaaggcgcca 5513383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 509 - 560
Target Start/End: Original strand, 25320055 - 25320106
Alignment:
Q  509 gaacactccctcactttctcctcctcccaagccaataaacgccgacgccaca 560  Q
    ||||||||||||||  |||||||||||||||||||||||||||  |||||||    
T  25320055 gaacactccctcacactctcctcctcccaagccaataaacgccttcgccaca 25320106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 143 - 300
Target Start/End: Complemental strand, 25109944 - 25109788
Alignment:
Q  143 cctagccatagccaaacctgataccaaagggaaccaaagacttcacactccaaaaataaatgtgttgttgtttcgtggctgcgacaaccatacacacaaa 242  Q
    |||||||| ||||||||| || ||||||||||||| || |  ||||| ||||||||||||||||||  |||||| || |  |  |||||| |||||||      
T  25109944 cctagccaaagccaaaccagagaccaaagggaacctaaaatatcacattccaaaaataaatgtgtt-atgtttcctgacacccgcaaccaaacacacagg 25109846  T
Q  243 atgcttcctcatgagatagagccctccgcctcaccaaattgtccttggttggaagtct 300  Q
      || ||  | ||||| ||| ||||||||| |||||||||||| || |||||||||||    
T  25109845 tcgcgtcggcctgagaaagaaccctccgccgcaccaaattgtctttagttggaagtct 25109788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 484 - 540
Target Start/End: Original strand, 3773663 - 3773719
Alignment:
Q  484 caaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagc 540  Q
    ||||||||| ||||||||||| || || |||||||||||  | ||||||||||||||    
T  3773663 caaaacaatgttatgtaataatactgagcactccctcacactttcctcctcccaagc 3773719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 4e-49; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 269 - 560
Target Start/End: Complemental strand, 24220917 - 24220626
Alignment:
Q  269 cgcctcaccaaattgtccttggttggaagtctattgcgaagaaggcgccacacgaatactaacaccttagaaggaatttgcttatgccaaatgtcgtcga 368  Q
    ||||||||||| ||||| || || |||||||| | |||||||||||| || || |  |   ||||||| || |||||||||||| ||||||||||||| |    
T  24220917 cgcctcaccaagttgtctttagtgggaagtctgtcgcgaagaaggcgtcaaaccatcatagacacctttgagggaatttgcttaagccaaatgtcgtcaa 24220818  T
Q  369 ctagggacctatccaccaactcatcagaattagtgagaaattggtaagctccccacaccgaataaccatgggaaggatctaacaaccagcgccaagtatc 468  Q
    |||  | || |||||| |||||  | ||||||||||||||  |||||||||||| |||||||||  |||| |||||||| | |||||| |||||   |||    
T  24220817 ctaacgtccgatccacaaactcgcctgaattagtgagaaagcggtaagctccccgcaccgaatactcatgagaaggatcaagcaaccaacgccagtcatc 24220718  T
Q  469 attggtattttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataaacgccgacgccaca 560  Q
    | || ||||||||||||||||||| |||||||||||||||||||||| ||||||  |||||||||||||  ||| |||||| ||||||||||    
T  24220717 actgatattttcctgcaaaacaatgttatgtaataacacagaacactacctcacactctcctcctcccacaccattaaacgacgacgccaca 24220626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 269 - 537
Target Start/End: Complemental strand, 37599141 - 37598873
Alignment:
Q  269 cgcctcaccaaattgtccttggttggaagtctattgcgaagaaggcgccacacgaatactaacaccttagaaggaatttgcttatgccaaatgtcgtcga 368  Q
    ||||||||||| ||||| || || |||||||| | ||||||||||||||| || |  |   ||||||| || |||||||||||||| ||||| ||||| |    
T  37599141 cgcctcaccaagttgtctttagtgggaagtctgtcgcgaagaaggcgccaaaccatcagagacacctttgagggaatttgcttatgtcaaatatcgtcaa 37599042  T
Q  369 ctagggacctatccaccaactcatcagaattagtgagaaattggtaagctccccacaccgaataaccatgggaaggatctaacaaccagcgccaagtatc 468  Q
    |||  | || ||||||||||||  | ||| | ||||||||  |||||||||||| ||||||||| ||||| | |||||| | |||||| ||||||  |||    
T  37599041 ctaacgtccgatccaccaactcgcctgaactggtgagaaagcggtaagctccccgcaccgaatacccatgagcaggatcaagcaaccaacgccaatcatc 37598942  T
Q  469 attggtattttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctccca 537  Q
    | || |||||| |||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||    
T  37598941 actgatatttttctgcaaaacaatgttatgtaataacacagaacactccatcacattctcctcctccca 37598873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 442 - 537
Target Start/End: Original strand, 32487912 - 32488007
Alignment:
Q  442 aggatctaacaaccagcgccaagtatcattggtattttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctccca 537  Q
    ||||||||||||||| | |||||||||||   |  |||||||||||||||  ||||||||||| ||||| |||||||||||  |||||||||||||    
T  32487912 aggatctaacaaccacctccaagtatcatgaatcgtttcctgcaaaacaacgttatgtaataaaacagagcactccctcacactctcctcctccca 32488007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 266 - 366
Target Start/End: Complemental strand, 5539582 - 5539482
Alignment:
Q  266 ctccgcctcaccaaattgtccttggttggaagtctattgcgaagaaggcgccacacgaatactaacaccttagaaggaatttgcttatgccaaatgtcgt 365  Q
    ||||||| |||||||||||| || || |||||||| ||||| || ||||||||||| || |   ||||||| |||||||| ||||||||||| |||||||    
T  5539582 ctccgccgcaccaaattgtctttagtaggaagtctgttgcgtaggaggcgccacacaaacagagacacctttgaaggaatatgcttatgccagatgtcgt 5539483  T
Q  366 c 366  Q
    |    
T  5539482 c 5539482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 290 - 560
Target Start/End: Original strand, 18697255 - 18697517
Alignment:
Q  290 gttggaagtctattgcgaagaaggcgccacacgaatactaacaccttagaaggaatttgcttatgccaaatgtcgtcgactagggacctatccaccaact 389  Q
    ||||||| |||||||||||||||||||||||  || |   ||||||| |||||||| |  ||||||||||||||||| || ||   || |||| | ||||    
T  18697255 gttggaattctattgcgaagaaggcgccacagaaacaaagacacctttgaaggaatgtttttatgccaaatgtcgtcaacaagattcccatccgctaact 18697354  T
Q  390 catcagaattagtgagaaattggtaagctccccacaccgaataaccatgggaaggatctaacaaccagcgccaagtatcattggtattttcctgcaaaac 489  Q
    |  |  ||||||| || ||  |||| |||  || ||||||||| |||||   ||| |||||| |||| | ||||  ||| |    ||| |||||||||||    
T  18697355 ccccgtaattagttaggaagcggtatgcttgccgcaccgaatagccatgaacagggtctaacgaccacctccaaacatcgtgaacattatcctgcaaaac 18697454  T
Q  490 aatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataaacgccgacgccaca 560  Q
    ||| ||||||||||| ||||||||||||        ||||||||||||||| |||||||||| ||||||||    
T  18697455 aatgttatgtaataaaacagaacactcc--------ctcctcctcccaagctaataaacgcctacgccaca 18697517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 428 - 558
Target Start/End: Original strand, 5663407 - 5663538
Alignment:
Q  428 gaataaccatgggaaggatctaacaaccagcgccaagtatcattggtattttcctgcaaaacaatatt-atgtaataacacagaacactccctcactttc 526  Q
    ||||| ||||| | |||||||||  |||| | |||||||||||    ||| |||||||||||||| || ||||||||| |  |||||||||||||| ||     
T  5663407 gaatagccatgagtaggatctaaataccacctccaagtatcatgaacattatcctgcaaaacaatgtttatgtaataaaattgaacactccctcacattt 5663506  T
Q  527 tcctcctcccaagccaataaacgccgacgcca 558  Q
    ||||||||||| ||||| || |||| ||||||    
T  5663507 tcctcctcccaggccaacaatcgcctacgcca 5663538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 522
Target Start/End: Complemental strand, 34116147 - 34116041
Alignment:
Q  416 gctccccacaccgaataaccatgggaaggatctaacaaccagcgccaagtatcattggtattttcctgcaaaacaatattatgtaataacacagaacact 515  Q
    ||||||| |||||| ||||| ||   ||||||||||||||| ||||||| |||||   | ||||||||||||||||| ||||| | |||  |||| ||||    
T  34116147 gctcccctcaccgagtaaccctgaataggatctaacaaccaacgccaagcatcatgaatgttttcctgcaaaacaatgttatgaagtaaaccagagcact 34116048  T
Q  516 ccctcac 522  Q
    |||||||    
T  34116047 ccctcac 34116041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 424 - 549
Target Start/End: Original strand, 37108588 - 37108713
Alignment:
Q  424 caccgaataaccatgggaaggatctaacaaccagcgccaagtatcattggtattttcctgcaaaacaatattatgtaataacacagaacactccctcact 523  Q
    |||||||||||| ||   |||||||||||||||  |||||| ||||| |  ||||| |||||||||| | || || | ||| |||||||||| |||| |     
T  37108588 caccgaataaccctgaataggatctaacaaccaatgccaagcatcatggacatttttctgcaaaacagtgttgtgaagtaaaacagaacacttcctctca 37108687  T
Q  524 ttctcctcctcccaagccaataaacg 549  Q
     |||||||||||||||| || |||||    
T  37108688 ctctcctcctcccaagcaaacaaacg 37108713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 476 - 542
Target Start/End: Complemental strand, 15139993 - 15139927
Alignment:
Q  476 ttttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagcca 542  Q
    ||||||||||||||||| ||||||||||| | || |||||| |||||  | ||||||||||| ||||    
T  15139993 ttttcctgcaaaacaatgttatgtaataaaaaagcacactctctcacactatcctcctcccacgcca 15139927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 543
Target Start/End: Original strand, 37325917 - 37326018
Alignment:
Q  442 aggatctaacaaccagcgccaagtatcattggtattttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagcc 541  Q
    ||||||||||||||| ||||| | ||| |    ||||||||||||| |||| |||| | ||||  ||| ||||||||||||  ||||||||||||| |||    
T  37325917 aggatctaacaaccaacgccaggcatcgtgcacattttcctgcaaatcaatgttatcttataaagcagcacactccctcacactctcctcctcccacgcc 37326016  T
Q  542 aa 543  Q
    ||    
T  37326017 aa 37326018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 444 - 516
Target Start/End: Original strand, 2089720 - 2089792
Alignment:
Q  444 gatctaacaaccagcgccaagtatcattggtattttcctgcaaaacaatattatgtaataacacagaacactc 516  Q
    |||| |||||||| | |||||| |||||   ||| ||||||||||||| |||| ||||||||| |||||||||    
T  2089720 gatccaacaaccatctccaagtgtcattaacattatcctgcaaaacaacattaggtaataacatagaacactc 2089792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 274 - 354
Target Start/End: Complemental strand, 3156275 - 3156195
Alignment:
Q  274 caccaaattgtccttggttggaagtctattgcgaagaaggcgccacacgaatactaacaccttagaaggaatttgcttatg 354  Q
    ||||||||||||  | || ||||||||||||||||| ||||||||||| || |   | ||||| |||||||| ||||||||    
T  3156275 caccaaattgtctctagtaggaagtctattgcgaaggaggcgccacacaaacagagatacctttgaaggaatatgcttatg 3156195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 480 - 540
Target Start/End: Original strand, 20213778 - 20213838
Alignment:
Q  480 cctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagc 540  Q
    ||||||| ||||| |||||||| ||  |||||||||||||||   ||||||||||||||||    
T  20213778 cctgcaacacaatgttatgtaacaaagcagaacactccctcagactctcctcctcccaagc 20213838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 478 - 605
Target Start/End: Original strand, 12950330 - 12950457
Alignment:
Q  478 ttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataaacgccgacgccacatacctcccccttcacca 577  Q
    ||||||||||||||| ||||| | ||| |||||||||||||||||  |||||||||||||||| |||||| ||||||||||||| ||  ||||||| |||    
T  12950330 ttcctgcaaaacaatgttatgaagtaaaacagaacactccctcacactctcctcctcccaagctaataaatgccgacgccacattccctccccttcccca 12950429  T
Q  578 tctgctcccaagatcctcatcatatcca 605  Q
    ||  | || || |||||| |||||||||    
T  12950430 tcctcgcctaaaatcctcttcatatcca 12950457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 479 - 614
Target Start/End: Original strand, 36731123 - 36731258
Alignment:
Q  479 tcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataaacgccgacgccacatacctcccccttcaccat 578  Q
    |||||||||||||| || |||||||| |||||||||||||||||   ||||||||||||||| |||||||||| ||||||||  ||  |||| |||||||    
T  36731123 tcctgcaaaacaatgttctgtaataaaacagaacactccctcacaccctcctcctcccaagctaataaacgcctacgccacaacccctccccctcaccat 36731222  T
Q  579 ctgctcccaagatcctcatcatatccaacaccaaac 614  Q
    |||| |||||  ||||| |||| |||  ||||||||    
T  36731223 ctgcccccaacctcctcctcatgtcctccaccaaac 36731258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 268 - 321
Target Start/End: Original strand, 12950122 - 12950175
Alignment:
Q  268 ccgcctcaccaaattgtccttggttggaagtctattgcgaagaaggcgccacac 321  Q
    ||||| |||||| ||||| || ||||||||||||||||||||||||||||||||    
T  12950122 ccgccgcaccaagttgtcttttgttggaagtctattgcgaagaaggcgccacac 12950175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 540
Target Start/End: Original strand, 18378069 - 18378341
Alignment:
Q  268 ccgcctcaccaaattgtccttggttggaagtctattgcgaagaaggcgccacacgaatactaacaccttagaaggaatttgcttatgccaaatgtcgtcg 367  Q
    ||||| ||||| | ||||||| ||| ||||||| ||||||||||||||||| || || |   ||||||| || ||||||| ||||||||| | || |||     
T  18378069 ccgccgcaccagaatgtcctttgttagaagtctgttgcgaagaaggcgccatacaaacagagacacctttgatggaattttcttatgccagacgttgtca 18378168  T
Q  368 actagggacctatccaccaactcatcagaattagtgagaaattggtaagctccccacaccgaataaccatgggaaggatctaacaaccagcgccaagtat 467  Q
    || || | |||||||||   |||| ||||| ||||||| ||  | || ||||||| ||||  |||||| ||   | |||||| |  ||| || |||| ||    
T  18378169 acaagagtcctatccacaggctcaccagaagtagtgaggaagcgatatgctcccctcaccatataaccttgaataagatctagctgccaccgacaagcat 18378268  T
Q  468 cattggtattttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagc 540  Q
    |||    ||||||||||||| |||| |||||||| || |||  ||||||||||||   |||||||||||||||    
T  18378269 catgtacattttcctgcaaagcaatgttatgtaacaagacaacacactccctcacaccctcctcctcccaagc 18378341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 274 - 366
Target Start/End: Original strand, 36730918 - 36731010
Alignment:
Q  274 caccaaattgtccttggttggaagtctattgcgaagaaggcgccacacgaatactaacaccttagaaggaatttgcttatgccaaatgtcgtc 366  Q
    |||||| ||||| || ||||||| |||||||||||||||||||||||  || |   ||||||| |||||||| |  |||||||| ||||||||    
T  36730918 caccaagttgtcttttgttggaattctattgcgaagaaggcgccacataaacaaagacacctttgaaggaatgtttttatgccagatgtcgtc 36731010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 366
Target Start/End: Original strand, 33335355 - 33335434
Alignment:
Q  287 ttggttggaagtctattgcgaagaaggcgccacacgaatactaacaccttagaaggaatttgcttatgccaaatgtcgtc 366  Q
    ||||| |||| |||||| ||||||||||||||||| ||||   ||||||| |||||||  || |||||||||| ||||||    
T  33335355 ttggtaggaactctattacgaagaaggcgccacaccaatagagacacctttgaaggaacatgtttatgccaaacgtcgtc 33335434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 479 - 537
Target Start/End: Complemental strand, 41225998 - 41225940
Alignment:
Q  479 tcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctccca 537  Q
    |||||||||||||||||||| || || ||||| |||||||||||   ||||||||||||    
T  41225998 tcctgcaaaacaatattatgcaaaaaaacagagcactccctcaccaactcctcctccca 41225940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 549
Target Start/End: Complemental strand, 1233424 - 1233355
Alignment:
Q  480 cctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataaacg 549  Q
    |||| |||||||  ||||| ||||| |  ||||||||||||||  ||||||||||||||||||| |||||    
T  1233424 cctgtaaaacaaagttatgcaataatagtgaacactccctcacactctcctcctcccaagccaacaaacg 1233355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 560
Target Start/End: Original strand, 55428241 - 55428322
Alignment:
Q  479 tcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataaacgccgacgccaca 560  Q
    |||||||||||||| ||||| | ||  |  ||||||||| ||||  ||||||||||||||||||| | ||| ||||||||||    
T  55428241 tcctgcaaaacaatgttatgaagtataattgaacactccttcacactctcctcctcccaagccaacagacggcgacgccaca 55428322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 475 - 559
Target Start/End: Original strand, 32517306 - 32517390
Alignment:
Q  475 attttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataaacgccgacgccac 559  Q
    |||||||||||||||||  |||   | |||||||||||| ||||||||  | ||||||||||| ||||| || | ||||||||||    
T  32517306 attttcctgcaaaacaacgttacaaagtaacacagaacattccctcacactatcctcctcccacgccaacaacctccgacgccac 32517390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 480 - 540
Target Start/End: Original strand, 35273317 - 35273377
Alignment:
Q  480 cctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagc 540  Q
    ||||||||||||| ||||||||||| ||   ||||||||||||  | ||||||||||||||    
T  35273317 cctgcaaaacaatgttatgtaataatactacacactccctcacgctttcctcctcccaagc 35273377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 540
Target Start/End: Complemental strand, 42830714 - 42830602
Alignment:
Q  428 gaataaccatgggaaggatctaacaaccagcgccaagtatcattggtattttcctgcaaaacaatattatgtaataacacagaacactccctcactttct 527  Q
    ||||||||||| ||||| || | |||||| | |||||||||| |   ||| || ||||||||||  ||||||||||| | |||||||||||  ||  | |    
T  42830714 gaataaccatgagaagggtccatcaaccatctccaagtatcagtaacattctcttgcaaaacaacgttatgtaataataaagaacactcccgaacactat 42830615  T
Q  528 cctcctcccaagc 540  Q
    |||||||||||||    
T  42830614 cctcctcccaagc 42830602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1185 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1185
Description:

Target: scaffold1185; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 416 - 537
Target Start/End: Complemental strand, 1650 - 1529
Alignment:
Q  416 gctccccacaccgaataaccatgggaaggatctaacaaccagcgccaagtatcattggtattttcctgcaaaacaatattatgtaataacacagaacact 515  Q
    ||||||||||||||||||||||    ||||||||||||||| | |||| ||||||    |||||||||||||||||  ||||| | ||||||| || |||    
T  1650 gctccccacaccgaataaccataaataggatctaacaaccacctccaattatcatgaacattttcctgcaaaacaacgttatgaagtaacacaaaatact 1551  T
Q  516 ccctcactttctcctcctccca 537  Q
    |||| ||  |||||||||||||    
T  1550 cccttacactctcctcctccca 1529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 243
Target Start/End: Complemental strand, 22873 - 22773
Alignment:
Q  143 cctagccatagccaaacctgataccaaagggaaccaaagacttcacactccaaaaataaatgtgttgttgtttcgtggctgcgacaaccatacacacaaa 242  Q
    |||||||| | |||||||||| |||||||||| || ||||| |||||  ||| |||||||||||||| |||||| || || | ||| ||| |||||||||    
T  22873 cctagccaaacccaaacctgagaccaaagggatccgaagacgtcacatcccataaataaatgtgttgctgtttcttgactcccacatccagacacacaaa 22774  T
Q  243 a 243  Q
    |    
T  22773 a 22773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 442 - 535
Target Start/End: Complemental strand, 46285 - 46192
Alignment:
Q  442 aggatctaacaaccagcgccaagtatcattggtattttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcc 535  Q
    ||||||| ||| ||| |||||||||||||    ||| ||||||||||||| |||||||||||| | |||||| ||||||||   ||||||||||    
T  46285 aggatctgacagccaccgccaagtatcatgaacattatcctgcaaaacaacattatgtaataaaatagaacattccctcacagactcctcctcc 46192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 475 - 552
Target Start/End: Complemental strand, 3508 - 3431
Alignment:
Q  475 attttcctgcaaaacaatattatgtaataacacagaacactccctcactttctcctcctcccaagccaataaacgccg 552  Q
    |||||||||||||||||| |||  ||||||  ||||||||||||||||  | ||||||||||| || |||||| ||||    
T  3508 attttcctgcaaaacaatgttagataataaagcagaacactccctcacactatcctcctcccatgctaataaatgccg 3431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University