View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9217_low_3 (Length: 454)
Name: NF9217_low_3
Description: NF9217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9217_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 8e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 242 - 435
Target Start/End: Original strand, 10238972 - 10239165
Alignment:
| Q |
242 |
aattgaacatgattttgacttatcaaggtaaagatatttaaataaaattcactccccggacaacgaatttttctactcacaactacctatatggctgact |
341 |
Q |
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| T |
10238972 |
aattgaacatgattttgacttatcaaggtaaaaatatttaaataaaattcactcccccgacaacaaaattttctactcacaactacctatatggctgact |
10239071 |
T |
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| Q |
342 |
cctactatctcgaatatttctttgggcgtcttgcccacaccttgcaccattaaactctaattcccatttttccacacaacatcactccggtcct |
435 |
Q |
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| T |
10239072 |
cctactatctcgaatatttctttgggcgtcttgcccacaccttgcaccattaaactctaattcccatttttccacacaacatcactccggtcct |
10239165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 38698644 - 38698806
Alignment:
| Q |
16 |
tatataatattctccgtattctaaagaaaattgtgacacaagcgtcttcaattctggatgttcactacaccttgatccaatataacataaaccagccata |
115 |
Q |
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| T |
38698644 |
tatataatcttctccgtattttaaagaaaattgtgacataagcttcttcaaaactggaagttccttataccttgattcaacataacataaactagctata |
38698743 |
T |
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| Q |
116 |
gattccttcacttctgggagaactttcctgaacaacattgagactttagatgcaaaattctag |
178 |
Q |
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| T |
38698744 |
ggttccttcacttctgggagaactttcctgaacaacattgagactttagataccaaattctag |
38698806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 16 - 174
Target Start/End: Original strand, 38700590 - 38700748
Alignment:
| Q |
16 |
tatataatattctccgtattctaaagaaaattgtgacacaagcgtcttcaattctggatgttcactacaccttgatccaatataacataaaccagccata |
115 |
Q |
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| T |
38700590 |
tatatattcttcaccgtattttaaagaaaattgtgacataaccatcttcaaagctggaagttcattataccatgaaccaatgtaacataagctagcgata |
38700689 |
T |
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| Q |
116 |
gattccttcacttctgggagaactttcctgaacaacattgagactttagatgcaaaatt |
174 |
Q |
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| T |
38700690 |
tcgtcgttcacttctgggggaacttccctgaacaacattgagactttagatacaaaatt |
38700748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 40 - 175
Target Start/End: Complemental strand, 39447218 - 39447083
Alignment:
| Q |
40 |
agaaaattgtgacacaagcgtcttcaattctggatgttcactacaccttgatccaatataacataaaccagccatagattccttcacttctgggagaact |
139 |
Q |
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| T |
39447218 |
agaaaattgtgaccgaagcttctgcaagtctggaagttcactaaactttgctccaatatagcataaactagcaatagcttccttcatttcggggatgaat |
39447119 |
T |
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| Q |
140 |
ttcctgaacaacattgagactttagatgcaaaattc |
175 |
Q |
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| T |
39447118 |
tccctaaacaacattgaaacttcagatacaaaattc |
39447083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 159
Target Start/End: Complemental strand, 36276972 - 36276881
Alignment:
| Q |
61 |
cttcaattctggatgttcactacaccttgatccaatataacataaaccagccatagattccttcacttctgggagaactttcctgaacaacattgagac |
159 |
Q |
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| T |
36276972 |
cttcaattctggaacttgactacaccttgatccaatataaaa-------gctatatattctttcacttctgggagaactttcctgaaaaacattgagac |
36276881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 288
Target Start/End: Complemental strand, 36276864 - 36276817
Alignment:
| Q |
241 |
taattgaacatgattttgacttatcaaggtaaagatatttaaataaaa |
288 |
Q |
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| T |
36276864 |
taattgaacataattttgagttatcaaggtaaagatatttaaataaaa |
36276817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 326
Target Start/End: Original strand, 38698916 - 38699019
Alignment:
| Q |
223 |
aaacaagtgtaaaatatttaattgaacatgattttgacttatcaaggtaaagatatttaaataaaattcactccccggacaacgaatttttctactcaca |
322 |
Q |
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|||||||||||||| ||||||| |||||| | |||||||||| ||| |||||||||||||| ||||| | ||| |||| |||||||||||||||| |
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| T |
38698916 |
aaacaagtgtaaaaagtttaatttaacatggtgttgacttatcgaggcaaagatatttaaattaaattttgttccccaacaattaatttttctactcaca |
38699015 |
T |
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| Q |
323 |
acta |
326 |
Q |
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|||| |
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| T |
38699016 |
acta |
38699019 |
T |
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