View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9217_low_8 (Length: 320)
Name: NF9217_low_8
Description: NF9217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9217_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 301
Target Start/End: Original strand, 37562037 - 37562348
Alignment:
| Q |
12 |
tatactctttgctatagtagtaatagaatagccgtgtctcattgaaaatacggcaatgcgtcagataaattgcttgtgcttggcttacttctaaatacta |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37562037 |
tatactctttgctatagtagtaatagaatagccgtgtctcattgaaaatacgacaatgcgtcagataaattgcttgtgcttggcttacttctaaatacta |
37562136 |
T |
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| Q |
112 |
tatgtagttgccatcttctgttactagtattttgatgacttcaacaattgtaagaagtggtattctgtctca----------------------attcca |
189 |
Q |
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| T |
37562137 |
tatgtagttgccatcttctgttactagtattttgatgacttcaacaattgtaagaagtggtattctgtctcaatttggtgtcgtagttgtttccattcca |
37562236 |
T |
|
| Q |
190 |
acagaataactatcactatatcaggttgttactgaaggaagacaaactagtttggagacaaaaaataatgttgatgcaaatagaaagaaatctggtcgag |
289 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37562237 |
actgaataactatcactatatcaggttgttactgaaggaagacaaactagtttggagacaaaaaataatgttgatgcaaatagaaagaaatctggtcgtg |
37562336 |
T |
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| Q |
290 |
gaagagggagtt |
301 |
Q |
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|||||||||||| |
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| T |
37562337 |
gaagagggagtt |
37562348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 301
Target Start/End: Original strand, 37521919 - 37522228
Alignment:
| Q |
12 |
tatactctttgctatagtagtaatagaatagccgtgtctcattgaaaatacggcaatgcgtcagataaattgcttgtgcttggcttacttctaaatacta |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37521919 |
tatactctttgctatagtagtaatagaatagccgtgtctcattgaaaatacggcaatgcgtcagataaattgtttgtgcttggcttacttctaaatac-- |
37522016 |
T |
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| Q |
112 |
tatgtagttgccatcttctgttactagtattttgatgacttcaacaattgtaagaagtggtattctgtctca----------------------attcca |
189 |
Q |
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| T |
37522017 |
tatgtagttgccatcttctgttactagtattttgatgacttcaacaattgtaagaagtggtactctgtctcaatttggtgtcgtagttgtttccattcca |
37522116 |
T |
|
| Q |
190 |
acagaataactatcactatatcaggttgttactgaaggaagacaaactagtttggagacaaaaaataatgttgatgcaaatagaaagaaatctggtcgag |
289 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37522117 |
actgaataactatcactatatcaggttgttactgaaggaagacaaactagtttggagacaaaaaataatgttgatgcaaatagaaagaaatctggtcgtg |
37522216 |
T |
|
| Q |
290 |
gaagagggagtt |
301 |
Q |
| |
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|||||||||||| |
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| T |
37522217 |
gaagagggagtt |
37522228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 301
Target Start/End: Original strand, 37687060 - 37687369
Alignment:
| Q |
12 |
tatactctttgctatagtagtaatagaatagccgtgtctcattgaaaatacggcaatgcgtcagataaattgcttgtgcttggcttacttctaaatacta |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37687060 |
tatactctttgctatagtagtaatagaatagccgtgtctcattgaaaatacggcaatgcgtcagataaattgtttgtgcttggcttacttctaaatac-- |
37687157 |
T |
|
| Q |
112 |
tatgtagttgccatcttctgttactagtattttgatgacttcaacaattgtaagaagtggtattctgtctca----------------------attcca |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
37687158 |
tatgtagttgccatcttctgttactagtattttgatgacttcaacaattgtaagaagtggtactctgtctcaatttggtgtcgtagttgtttccattcca |
37687257 |
T |
|
| Q |
190 |
acagaataactatcactatatcaggttgttactgaaggaagacaaactagtttggagacaaaaaataatgttgatgcaaatagaaagaaatctggtcgag |
289 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37687258 |
actgaataactatcactatatcaggttgttactgaaggaagacaaactagtttggagacaaaaaataatgttgatgcaaatagaaagaaatctggtcgtg |
37687357 |
T |
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| Q |
290 |
gaagagggagtt |
301 |
Q |
| |
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|||||||||||| |
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| T |
37687358 |
gaagagggagtt |
37687369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 12 - 173
Target Start/End: Original strand, 37784196 - 37784357
Alignment:
| Q |
12 |
tatactctttgctatagta--gtaatagaatagccgtgtctcattgaaaatacggcaatgcgtcagataaattgcttgtgcttggcttacttctaaatac |
109 |
Q |
| |
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||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| |
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| T |
37784196 |
tatactctttgctatagtatagtaatagaatagctgtgtctcattgaaaatacggcaattcgtcagataaattgcttatgtttggcttacttctaaatac |
37784295 |
T |
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| Q |
110 |
tatatgtagttgccatcttctgttactagtattttgatgacttcaacaattgtaagaagtggta |
173 |
Q |
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| || |||||| ||| |||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
37784296 |
ttta--tagttgtcattttctgttaatagtattttgatgacttcaaccgctgtaagaagtggta |
37784357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 208 - 301
Target Start/End: Original strand, 37784418 - 37784520
Alignment:
| Q |
208 |
tatcaggttgttactgaaggaagacaaactagtttgga---------gacaaaaaataatgttgatgcaaatagaaagaaatctggtcgaggaagaggga |
298 |
Q |
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|||||||||||| |||||||||||||| |||||||||| || ||||||||||||||||||||||||||| ||||||||||| |||||||| | |
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| T |
37784418 |
tatcaggttgttcctgaaggaagacaagctagtttggaaattggggagataaaaaataatgttgatgcaaatagaaacaaatctggtcgtggaagaggaa |
37784517 |
T |
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| Q |
299 |
gtt |
301 |
Q |
| |
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||| |
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| T |
37784518 |
gtt |
37784520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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