View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9218_high_1 (Length: 630)
Name: NF9218_high_1
Description: NF9218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9218_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 22 - 615
Target Start/End: Complemental strand, 48277599 - 48276990
Alignment:
| Q |
22 |
tttggtgttgtctataatcaattgcaaagaagagaaagtaataaaatatgactgtttgccactttacaaagaaaaattggttgcaattctatatttccac |
121 |
Q |
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| T |
48277599 |
tttggagttgtctataatcaattgcaaagaagagaaagtaataaaatatgactgtttgccactttacaaagaaaaattggctgcaattctatatttccac |
48277500 |
T |
|
| Q |
122 |
aatgtcatcatctaaaatacatatactttgtaatgaaaactaaaagacataccttgctacttgtgaatagaagttcttccccctgctcattacgccatga |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48277499 |
aatgtcatcatctaaaatacatatactttgtaatgaaaactaaaagacataccttgctacttgtgaatagaagttcttccccctgctcattacgccatga |
48277400 |
T |
|
| Q |
222 |
cgtgacctgtgctccattcaagctcacctaatttcaagaaaaagacagttaatcctaattcctaatgctacttttgattacatgttcaaactaaaaatat |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
48277399 |
cgtgacctgtgctccattcaagctcacctaatttcaagaaaaagacagttaatcctaattcctaatgctatttttgattacatgttcaaactaaaaatat |
48277300 |
T |
|
| Q |
322 |
cattatgaaccaagatttccttctcatgtattgatatttaaa----------------gttaaaactgatgcgaacacatcaatcgacaagctttcctca |
405 |
Q |
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| T |
48277299 |
cattatgaaccaagatttccttctcatgtattgatatttaaagttataaatgttaaaagttaaaactgatgcgaacacatcaatcgacaagctttcctca |
48277200 |
T |
|
| Q |
406 |
cccttgccgaagcgccttgtggggtccgaagcacaacttgactaactccattctggtcctttgtcatttctgttgctgccctaaagtcccacacagctgc |
505 |
Q |
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| T |
48277199 |
cccttgccgaagcgccttgtggggtccgaagcacaacttgactaactccattctggtcctttgtcatttctgttgctgccctaaagtcccacacagctgc |
48277100 |
T |
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| Q |
506 |
agaatgccccatctgaaataatttaagtcctcaactctcagagcaaaccctgatacgcttaatgaattccctacacgccaatgcccttagattgaagggg |
605 |
Q |
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| T |
48277099 |
agaatgccccatctgaaataatttaagtcctcaactctcagagcaaaccctgataagcttaatgaattccctacacgccaatgcccttagattgaagggg |
48277000 |
T |
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| Q |
606 |
ggatcaagtc |
615 |
Q |
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| T |
48276999 |
ggatccagtc |
48276990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 7e-29; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 405 - 530
Target Start/End: Complemental strand, 36807011 - 36806886
Alignment:
| Q |
405 |
acccttgccgaagcgccttgtggggtccgaagcacaacttgactaactccattctggtcctttgtcatttctgttgctgccctaaagtcccacacagctg |
504 |
Q |
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| T |
36807011 |
acccgtgccgaagcgccttgtggggtccgaagtacaacttgatcgattccattccagtcctttgtaaattcagttgctgctctgaagtcccacacagctg |
36806912 |
T |
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| Q |
505 |
cagaatgccccatctgaaataattta |
530 |
Q |
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| T |
36806911 |
ccgaatgccccatctaaaataattta |
36806886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 128 - 263
Target Start/End: Complemental strand, 36807304 - 36807168
Alignment:
| Q |
128 |
atcatctaaaa-tacatatactttgtaatgaaaactaaaagacataccttgctacttgtgaatagaagttcttccccctgctcattacgccatgacgtga |
226 |
Q |
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||||||||||| || | ||||||| |||| |||| | ||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
36807304 |
atcatctaaaactaaaaatactttttaatcaaaattcaaagacacaccttgcagcttgtgaatagcagttcttccccctgctcattacgccatgaagtga |
36807205 |
T |
|
| Q |
227 |
cctgtgctccattcaagctcacctaatttcaagaaaa |
263 |
Q |
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|||| ||||||| ||||| |||||||| |||||||| |
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| T |
36807204 |
cctgcgctccatgtaagcttacctaattgcaagaaaa |
36807168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 36807762 - 36807684
Alignment:
| Q |
40 |
caattgcaaagaagagaaagtaataaaatatgactgtttgccactttacaaagaaaaattggttgcaattctatatttcca |
120 |
Q |
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|||||||||| |||||||||||||||||| || |||||| | ||||||||||| ||||||| ||||||||||||||| |
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| T |
36807762 |
caattgcaaataagagaaagtaataaaatt--acgttttgcctcattacaaagaaatattggttaaaattctatatttcca |
36807684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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