View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9218_low_12 (Length: 295)

Name: NF9218_low_12
Description: NF9218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9218_low_12
NF9218_low_12
[»] chr4 (8 HSPs)
chr4 (17-198)||(1229726-1229907)
chr4 (263-295)||(51039156-51039188)
chr4 (263-295)||(6370979-6371011)
chr4 (263-295)||(11997684-11997716)
chr4 (264-292)||(12638825-12638853)
chr4 (263-295)||(15596395-15596427)
chr4 (263-295)||(26885290-26885322)
chr4 (263-295)||(37547064-37547096)
[»] chr2 (3 HSPs)
chr2 (263-295)||(21490702-21490734)
chr2 (263-295)||(30856806-30856838)
chr2 (263-295)||(31629603-31629635)
[»] chr8 (2 HSPs)
chr8 (264-295)||(6004944-6004975)
chr8 (263-295)||(1796495-1796527)
[»] chr7 (3 HSPs)
chr7 (264-295)||(27778079-27778110)
chr7 (263-295)||(31982056-31982088)
chr7 (263-295)||(41077540-41077572)
[»] chr6 (2 HSPs)
chr6 (264-295)||(12441538-12441569)
chr6 (263-295)||(32457292-32457324)
[»] chr5 (4 HSPs)
chr5 (264-295)||(125092-125123)
chr5 (263-295)||(19127123-19127155)
chr5 (263-295)||(34381011-34381043)
chr5 (263-295)||(39595271-39595303)
[»] chr1 (4 HSPs)
chr1 (263-294)||(8391368-8391399)
chr1 (264-295)||(10384211-10384242)
chr1 (263-295)||(5309080-5309112)
chr1 (263-295)||(32821634-32821666)
[»] scaffold0018 (1 HSPs)
scaffold0018 (264-294)||(36002-36032)
[»] chr3 (5 HSPs)
chr3 (264-294)||(29800590-29800620)
chr3 (263-295)||(14957835-14957867)
chr3 (263-295)||(20380929-20380961)
chr3 (263-295)||(45205287-45205319)
chr3 (263-295)||(51464312-51464344)
[»] scaffold0508 (1 HSPs)
scaffold0508 (263-295)||(11576-11608)
[»] scaffold0026 (1 HSPs)
scaffold0026 (263-295)||(113624-113656)
[»] scaffold0002 (1 HSPs)
scaffold0002 (263-295)||(440717-440749)


Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 1229907 - 1229726
Alignment:
Q  17 acttaattcaacaaatttgatgtgattagaaagatgtctgagtttgcggagaatcatatattataagaattttaatgaccaaaccttcttaaggatccaa 116  Q
    ||||||| |||| | ||||||||||||||||||||||  || ||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||| |    
T  1229907 acttaatccaacgactttgatgtgattagaaagatgttcgattttacggagaatcatatattataaggattttagtgaccaaaccttcttaaggatccga 1229808  T
Q  117 tatattcttcttttgattggccttccatccctttgagctcctcttgataatttgatacctataaccaaaataaaacacacac 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1229807 tatattcttcttttgattggccttccatccctttgagctcctcttgataatttgatacctataaccaaaataaaacacacac 1229726  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 295
Target Start/End: Complemental strand, 51039188 - 51039156
Alignment:
Q  263 tgagaaatgatatttgtacaactactttgtgac 295  Q
    |||||||||||||||||||||||||||||||||    
T  51039188 tgagaaatgatatttgtacaactactttgtgac 51039156  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 6370979 - 6371011
Alignment:
Q  263 tgagaaatgatatttgtacaactactttgtgac 295  Q
    |||||||||||||||||||||| ||||||||||    
T  6370979 tgagaaatgatatttgtacaaccactttgtgac 6371011  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 11997684 - 11997716
Alignment:
Q  263 tgagaaatgatatttgtacaactactttgtgac 295  Q
    |||||||||||||||||||||| ||||||||||    
T  11997684 tgagaaatgatatttgtacaaccactttgtgac 11997716  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 292
Target Start/End: Original strand, 12638825 - 12638853
Alignment:
Q  264 gagaaatgatatttgtacaactactttgt 292  Q
    |||||||||||||||||||||||||||||    
T  12638825 gagaaatgatatttgtacaactactttgt 12638853  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 15596395 - 15596427
Alignment:
Q  263 tgagaaatgatatttgtacaactactttgtgac 295  Q
    |||||||||||||||||||||| ||||||||||    
T  15596395 tgagaaatgatatttgtacaaccactttgtgac 15596427  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 26885290 - 26885322
Alignment:
Q  263 tgagaaatgatatttgtacaactactttgtgac 295  Q
    |||||||||||||||||||||| ||||||||||    
T  26885290 tgagaaatgatatttgtacaaccactttgtgac 26885322  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 37547064 - 37547096
Alignment:
Q  263 tgagaaatgatatttgtacaactactttgtgac 295  Q
    |||||||||||||||||||||| ||||||||||    
T  37547064 tgagaaatgatatttgtacaaccactttgtgac 37547096  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 21490702 - 21490734
Alignment:
Q  263 tgagaaatgatatttgtacaactactttgtgac 295  Q
    |||||||||||||||||||||||||||||||||    
T  21490702 tgagaaatgatatttgtacaactactttgtgac 21490734  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 30856806 - 30856838
Alignment:
Q  263 tgagaaatgatatttgtacaactactttgtgac 295  Q
    |||||||||||||||||||||| ||||||||||    
T  30856806 tgagaaatgatatttgtacaaccactttgtgac 30856838  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 31629603 - 31629635
Alignment:
Q  263 tgagaaatgatatttgtacaactactttgtgac 295  Q
    |||||||||||||||||||||||||||| ||||    
T  31629603 tgagaaatgatatttgtacaactactttttgac 31629635  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 264 - 295
Target Start/End: Original strand, 6004944 - 6004975
Alignment:
Q  264 gagaaatgatatttgtacaactactttgtgac 295  Q
    ||||||||||||||||||||||||||||||||    
T  6004944 gagaaatgatatttgtacaactactttgtgac 6004975  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 1796495 - 1796527
Alignment:
Q  263 tgagaaatgatatttgtacaactactttgtgac 295  Q
    |||||||||||||||||||||| ||||||||||    
T  1796495 tgagaaatgatatttgtacaaccactttgtgac 1796527  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 264 - 295
Target Start/End: Original strand, 27778079 - 27778110
Alignment:
Q  264 gagaaatgatatttgtacaactactttgtgac 295  Q
    ||||||||||||||||||||||||||||||||    
T  27778079 gagaaatgatatttgtacaactactttgtgac 27778110  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 31982056 - 31982088
Alignment:
Q  263 tgagaaatgatatttgtacaactactttgtgac 295  Q
    |||||||||||||||||||||| ||||||||||    
T  31982056 tgagaaatgatatttgtacaaccactttgtgac 31982088  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Complemental strand, 41077572 - 41077540
Alignment:
Q  263 tgagaaatgatatttgtacaactactttgtgac 295  Q
    ||||||||||||||| |||||||||||||||||    
T  41077572 tgagaaatgatatttttacaactactttgtgac 41077540  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 264 - 295
Target Start/End: Original strand, 12441538 - 12441569
Alignment:
Q  264 gagaaatgatatttgtacaactactttgtgac 295  Q
    ||||||||||||||||||||||||||||||||    
T  12441538 gagaaatgatatttgtacaactactttgtgac 12441569  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Complemental strand, 32457324 - 32457292
Alignment:
Q  263 tgagaaatgatatttgtacaactactttgtgac 295  Q
    |||||||||||||||||||||| ||||||||||    
T  32457324 tgagaaatgatatttgtacaaccactttgtgac 32457292  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 264 - 295
Target Start/End: Original strand, 125092 - 125123
Alignment:
Q  264 gagaaatgatatttgtacaactactttgtgac 295  Q
    ||||||||||||||||||||||||||||||||    
T  125092 gagaaatgatatttgtacaactactttgtgac 125123  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 19127123 - 19127155
Alignment:
Q  263 tgagaaatgatatttgtacaactactttgtgac 295  Q
    |||||||||||||||||||||| ||||||||||    
T  19127123 tgagaaatgatatttgtacaaccactttgtgac 19127155  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 34381011 - 34381043
Alignment:
Q  263 tgagaaatgatatttgtacaactactttgtgac 295  Q
    |||||||||||||||||||||| ||||||||||    
T  34381011 tgagaaatgatatttgtacaaccactttgtgac 34381043  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 39595271 - 39595303
Alignment:
Q  263 tgagaaatgatatttgtacaactactttgtgac 295  Q
    |||||||||||||||||||||| ||||||||||    
T  39595271 tgagaaatgatatttgtacaaccactttgtgac 39595303  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 263 - 294
Target Start/End: Complemental strand, 8391399 - 8391368
Alignment:
Q  263 tgagaaatgatatttgtacaactactttgtga 294  Q
    ||||||||||||||||||||||||||||||||    
T  8391399 tgagaaatgatatttgtacaactactttgtga 8391368  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 264 - 295
Target Start/End: Original strand, 10384211 - 10384242
Alignment:
Q  264 gagaaatgatatttgtacaactactttgtgac 295  Q
    ||||||||||||||||||||||||||||||||    
T  10384211 gagaaatgatatttgtacaactactttgtgac 10384242  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Complemental strand, 5309112 - 5309080
Alignment:
Q  263 tgagaaatgatatttgtacaactactttgtgac 295  Q
    |||||||||||||||||||||| ||||||||||    
T  5309112 tgagaaatgatatttgtacaaccactttgtgac 5309080  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 32821634 - 32821666
Alignment:
Q  263 tgagaaatgatatttgtacaactactttgtgac 295  Q
    |||||||||||||||||||||| ||||||||||    
T  32821634 tgagaaatgatatttgtacaaccactttgtgac 32821666  T

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Target: scaffold0018 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 294
Target Start/End: Original strand, 36002 - 36032
Alignment:
Q  264 gagaaatgatatttgtacaactactttgtga 294  Q
    |||||||||||||||||||||||||||||||    
T  36002 gagaaatgatatttgtacaactactttgtga 36032  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 294
Target Start/End: Complemental strand, 29800620 - 29800590
Alignment:
Q  264 gagaaatgatatttgtacaactactttgtga 294  Q
    |||||||||||||||||||||||||||||||    
T  29800620 gagaaatgatatttgtacaactactttgtga 29800590  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 14957835 - 14957867
Alignment:
Q  263 tgagaaatgatatttgtacaactactttgtgac 295  Q
    |||||||||||||||||||||| ||||||||||    
T  14957835 tgagaaatgatatttgtacaaccactttgtgac 14957867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Complemental strand, 20380961 - 20380929
Alignment:
Q  263 tgagaaatgatatttgtacaactactttgtgac 295  Q
    |||||||||||||||||||||| ||||||||||    
T  20380961 tgagaaatgatatttgtacaaccactttgtgac 20380929  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 45205287 - 45205319
Alignment:
Q  263 tgagaaatgatatttgtacaactactttgtgac 295  Q
    |||||||||||||||||||||||| ||||||||    
T  45205287 tgagaaatgatatttgtacaactattttgtgac 45205319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Complemental strand, 51464344 - 51464312
Alignment:
Q  263 tgagaaatgatatttgtacaactactttgtgac 295  Q
    |||||||||||||||||||||| ||||||||||    
T  51464344 tgagaaatgatatttgtacaaccactttgtgac 51464312  T

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Target: scaffold0508 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Complemental strand, 11608 - 11576
Alignment:
Q  263 tgagaaatgatatttgtacaactactttgtgac 295  Q
    |||||||||||||||||||| ||||||||||||    
T  11608 tgagaaatgatatttgtacatctactttgtgac 11576  T

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Target: scaffold0026 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 113624 - 113656
Alignment:
Q  263 tgagaaatgatatttgtacaactactttgtgac 295  Q
    |||||||||||||||||||||| ||||||||||    
T  113624 tgagaaatgatatttgtacaaccactttgtgac 113656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 440717 - 440749
Alignment:
Q  263 tgagaaatgatatttgtacaactactttgtgac 295  Q
    |||||||||||||||||||||||||||| ||||    
T  440717 tgagaaatgatatttgtacaactactttatgac 440749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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