View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9218_low_13 (Length: 267)
Name: NF9218_low_13
Description: NF9218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9218_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 23934743 - 23934487
Alignment:
| Q |
1 |
attggtgatccactaacatgagcttcatagtttaaggtgtaaagatacggtagaatcttgtaccttatacctaaagcatttcttgctgattgagctactg |
100 |
Q |
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| T |
23934743 |
attggtgatccactaacatgagcttcatagtttaaggtgtaaagatacggtagaatcttgtaccttatacctaaagcatttcttgctgattgagctactg |
23934644 |
T |
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| Q |
101 |
aatcccattggtaaagctcttgtctcggggagtagtagtttgcatgatctcttgaaaatgggtagaaagcaccaacttcaatccatctattgcatagttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23934643 |
aatcccattggtaaagctcttgtctcggggagtagtagtttgcatgatctcttgaaaatgggtagaaagcaccaacttcaatccatctattgcatagttc |
23934544 |
T |
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| Q |
201 |
ttcagttggttgtgggtaaaatccacatatgtcagaaccgaccattggaacaccaaa |
257 |
Q |
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| T |
23934543 |
ttcagttggttgtgggtaaaatccacatatgtcagaaccaaccattggaacaccaaa |
23934487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 9 - 257
Target Start/End: Original strand, 50110067 - 50110315
Alignment:
| Q |
9 |
tccactaacatgagcttcatagtttaaggtgtaaagatacggtagaatcttgtaccttatacctaaagcatttcttgctgattgagctactgaatcccat |
108 |
Q |
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| T |
50110067 |
tccactaatatgagcctcatagtttagggtgtacagatagggtaggagcttatacctcatccccaatgcatttctagctgattcggctaccgtctcccac |
50110166 |
T |
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| Q |
109 |
tggtaaagctcttgtctcggggagtagtagtttgcatgatctcttgaaaatgggtagaaagcaccaacttcaatccatctattgcatagttcttcagttg |
208 |
Q |
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| T |
50110167 |
tggtaaagttcttgtctaggagagtagtagtttgcatggtcccttgaaaatggatagaaagcaccaacttcaatccacctattgcaaagctcttcagtgg |
50110266 |
T |
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| Q |
209 |
gttgtgggtaaaatccacatatgtcagaaccgaccattggaacaccaaa |
257 |
Q |
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||||||| || || |||||||| || ||||| |||||||| |||||||| |
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| T |
50110267 |
gttgtggatagaaaccacatatatctgaaccaaccattggcacaccaaa |
50110315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 206
Target Start/End: Original strand, 50120057 - 50120254
Alignment:
| Q |
9 |
tccactaacatgagcttcatagtttaaggtgtaaagatacggtagaatcttgtaccttatacctaaagcatttcttgctgattgagctactgaatcccat |
108 |
Q |
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|||||||| |||||| || ||||||| ||||||| ||| ||||||| ||| ||||| || || || |||||||| ||||||| ||||||||| |||||| |
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| T |
50120057 |
tccactaatatgagcctcgtagtttattgtgtaaaaatagggtagaagcttatacctcatccccaaggcatttctagctgattcagctactgactcccat |
50120156 |
T |
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| Q |
109 |
tggtaaagctcttgtctcggggagtagtagtttgcatgatctcttgaaaatgggtagaaagcaccaacttcaatccatctattgcatagttcttcagt |
206 |
Q |
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| T |
50120157 |
tggtaaagttcttgtctaggggaaatgacacttgaatgatccctcgagaaaggatagaaagcaccaacttcaatccacctattacaaagctcttcagt |
50120254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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