View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9218_low_15 (Length: 258)
Name: NF9218_low_15
Description: NF9218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9218_low_15 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 1606386 - 1606129
Alignment:
| Q |
1 |
atgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1606386 |
atgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctgttgttg |
1606287 |
T |
|
| Q |
101 |
acaagtacaaaaccttcttgggtaggccttggcaacaatattcgagagttatggtgatgaaaactttcatggacactttagtgagcccccttggttggtc |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
1606286 |
acaagtacaaaaccttcttgggcaggccttggcaacaatattcaagagttatggtgatgaaaactttcatggacactttagtaagccccctgggttggtc |
1606187 |
T |
|
| Q |
201 |
tccatggggtgacactgattttgctcaagacacattgtattatggagagtatgagaat |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1606186 |
tccatggggtgacactgattttgctcaagacacattgtattatggagagtatgagaat |
1606129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 1629684 - 1629427
Alignment:
| Q |
1 |
atgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
1629684 |
atgatcactgcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaaacctgttgttg |
1629585 |
T |
|
| Q |
101 |
acaagtacaaaaccttcttgggtaggccttggcaacaatattcgagagttatggtgatgaaaactttcatggacactttagtgagcccccttggttggtc |
200 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
1629584 |
acaagtacaaaaccttcttgggcagaccttggcaacaatattcaagagtaatggtgatgaaaacttttatggacactttagtgagccccctaggttggtc |
1629485 |
T |
|
| Q |
201 |
tccatggggtgacactgattttgctcaagacacattgtattatggagagtatgagaat |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1629484 |
tccatggggtgacactgattttgctcaagacacattgtattatggagagtatgagaat |
1629427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 10821014 - 10821271
Alignment:
| Q |
1 |
atgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10821014 |
atgatcactgcccaaggtcgaggtgatccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctgttgttg |
10821113 |
T |
|
| Q |
101 |
acaagtacaaaaccttcttgggtaggccttggcaacaatattcgagagttatggtgatgaaaactttcatggacactttagtgagcccccttggttggtc |
200 |
Q |
| |
|
||||||||||||||||||| || || ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| |
|
|
| T |
10821114 |
acaagtacaaaaccttcttaggaagaccttggcaacaatattcaagagttatggtgatgaaaacttttatggacactttagtcagccccctaggttggtc |
10821213 |
T |
|
| Q |
201 |
tccatggggtgacactgattttgctcaagacacattgtattatggagagtatgagaat |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10821214 |
tccatggggtgacactgattttgctcaagacacattgtattatggagagtatgagaat |
10821271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 1623508 - 1623255
Alignment:
| Q |
1 |
atgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttg |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1623508 |
atgatcacagcccaaggtcgtggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcagatctaaagcctgttgttg |
1623409 |
T |
|
| Q |
101 |
acaagtacaaaaccttcttgggtaggccttggcaacaatattcgagagttatggtgatgaaaactttcatggacactttagtgagcccccttggttggtc |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
1623408 |
acaagtacaaaaccttcttgggaaggccttggcaacaattctcaagagttatggtgatgaaaacttttatggacactttagtgagccccctaggttggtc |
1623309 |
T |
|
| Q |
201 |
tccatggggtgacactgattttgctcaagacacattgtattatggagagtatga |
254 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1623308 |
tccatggggtgacacagattttgctcaagatacattgtattatggagagtatga |
1623255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 18781202 - 18780945
Alignment:
| Q |
1 |
atgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
18781202 |
atgatcacggcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattatggctgcatcagatctaaagcctgttgttg |
18781103 |
T |
|
| Q |
101 |
acaagtacaaaaccttcttgggtaggccttggcaacaatattcgagagttatggtgatgaaaactttcatggacactttagtgagcccccttggttggtc |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
18781102 |
acaagtacaaaaccttcttgggcaggccttggcaacaatattcaagagttatggtgatgaaaacttttatggacactttagtgagccccctaggttggtc |
18781003 |
T |
|
| Q |
201 |
tccatggggtgacactgattttgctcaagacacattgtattatggagagtatgagaat |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18781002 |
tccatggggtgacactgattttgctcaagacacattgtattatggcgagtatgagaat |
18780945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 12802768 - 12802541
Alignment:
| Q |
1 |
atgatcacagcccaaggtcgaggtgacccattccaaaacactggaatttcattccacaattgtcaaattagggctgcatcggatctaaagcctgttgttg |
100 |
Q |
| |
|
|||||||| ||||||||||| | ||||||||| ||||||||||||||||| | ||||| | ||| |||||||| || | ||| | ||||| ||||| | |
|
|
| T |
12802768 |
atgatcacggcccaaggtcgtgatgacccatttcaaaacactggaatttcgattcacaactctcagattagggccgcgccagatttcaagcccgttgtcg |
12802669 |
T |
|
| Q |
101 |
acaagtacaaaaccttcttgggtaggccttggcaacaatattcgagagttatggtgatgaaaactttcatggacactttagtgagcccccttggttggtc |
200 |
Q |
| |
|
|| | ||| ||||||||||| |||| |||||| ||| || |||||| |||| |||||| | |||||||| | ||| || || || | |||||||| |
|
|
| T |
12802668 |
ggaaattcaacaccttcttgggccggccctggcaaagatactctagagttgtggtcatgaaatcattcatggataatttggtcagtccaatgggttggtc |
12802569 |
T |
|
| Q |
201 |
tccatggggtgacactgattttgctcaa |
228 |
Q |
| |
|
||||||||| | ||| ||||||||||| |
|
|
| T |
12802568 |
tccatggggaggtactaattttgctcaa |
12802541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University