View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9218_low_17 (Length: 241)
Name: NF9218_low_17
Description: NF9218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9218_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 49979269 - 49979068
Alignment:
| Q |
15 |
tcatatccaacagcttgtttgttgttgtaccgaaccaacatataaaagacattcccacagctagaatccaaagtagctgaggttgtgaatgatctcaaaa |
114 |
Q |
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| T |
49979269 |
tcatatccaacagcttgtttgttgttgtaccgaaccaacatataaaagacattcc-acagctagaatccaaagtagctgaggttgtgaatgagctcaaaa |
49979171 |
T |
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| Q |
115 |
gctgcagcacctagttactgttgttgctatctcttctttcttactcatgatgagtcataaccctagctatctgtcagcaccttaattaattatgaatcat |
214 |
Q |
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| T |
49979170 |
gctgcagcacctagttactgttgttgctatctcttctttcttactcatgatgagtcataaccctagctatctgtcagcaccttaattaattatgaatcat |
49979071 |
T |
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| Q |
215 |
cta |
217 |
Q |
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||| |
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| T |
49979070 |
cta |
49979068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 49951738 - 49951786
Alignment:
| Q |
67 |
tcccacagctagaatccaaagtagctgaggttgtgaatgatctcaaaag |
115 |
Q |
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|||||||||| || |||||||||||||| |||||||||||||||||| |
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| T |
49951738 |
tcccacagctccaagccaaagtagctgagcgtgtgaatgatctcaaaag |
49951786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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