View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9218_low_5 (Length: 460)

Name: NF9218_low_5
Description: NF9218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9218_low_5
NF9218_low_5
[»] chr4 (15 HSPs)
chr4 (20-431)||(41442510-41442917)
chr4 (22-88)||(36071616-36071685)
chr4 (22-89)||(55147885-55147955)
chr4 (376-438)||(4958503-4958565)
chr4 (376-438)||(13264221-13264283)
chr4 (376-438)||(21935538-21935600)
chr4 (376-438)||(34353840-34353902)
chr4 (20-91)||(3643202-3643275)
chr4 (383-434)||(39697817-39697868)
chr4 (376-431)||(42395295-42395350)
chr4 (389-436)||(50730332-50730379)
chr4 (376-438)||(30057283-30057345)
chr4 (376-438)||(37310088-37310150)
chr4 (389-438)||(43512487-43512536)
chr4 (394-438)||(13578430-13578474)
[»] chr7 (13 HSPs)
chr7 (22-87)||(3940710-3940778)
chr7 (377-438)||(9498027-9498088)
chr7 (376-438)||(28424278-28424340)
chr7 (22-97)||(35812606-35812684)
chr7 (23-97)||(21828153-21828230)
chr7 (376-438)||(24061276-24061338)
chr7 (376-434)||(28501222-28501280)
chr7 (376-438)||(28805361-28805423)
chr7 (394-438)||(9712163-9712207)
chr7 (22-70)||(21129386-21129434)
chr7 (22-70)||(26912349-26912397)
chr7 (67-95)||(26914450-26914478)
chr7 (376-436)||(44616665-44616725)
[»] chr2 (5 HSPs)
chr2 (376-438)||(33041810-33041872)
chr2 (376-438)||(4183237-4183299)
chr2 (20-97)||(5163784-5163864)
chr2 (376-438)||(28153089-28153151)
chr2 (49-97)||(17271349-17271400)
[»] chr5 (8 HSPs)
chr5 (22-91)||(16570555-16570627)
chr5 (384-438)||(9688627-9688681)
chr5 (376-426)||(22931564-22931614)
chr5 (376-438)||(42916450-42916512)
chr5 (22-91)||(502803-502872)
chr5 (389-434)||(546867-546912)
chr5 (377-438)||(16789131-16789192)
chr5 (376-436)||(16891409-16891469)
[»] chr3 (9 HSPs)
chr3 (26-95)||(52706724-52706796)
chr3 (22-88)||(15670919-15670988)
chr3 (400-438)||(19879262-19879300)
chr3 (376-431)||(4860229-4860284)
chr3 (376-431)||(4880237-4880292)
chr3 (376-434)||(24430214-24430272)
chr3 (22-91)||(54417081-54417153)
chr3 (22-70)||(33682721-33682769)
chr3 (390-434)||(54447395-54447439)
[»] chr8 (15 HSPs)
chr8 (22-89)||(26835653-26835723)
chr8 (376-438)||(5570955-5571017)
chr8 (376-431)||(24480768-24480823)
chr8 (376-438)||(11787212-11787274)
chr8 (400-438)||(17072534-17072572)
chr8 (400-438)||(17575699-17575737)
chr8 (22-95)||(22486654-22486730)
chr8 (36-89)||(28376657-28376713)
chr8 (376-438)||(29716921-29716983)
chr8 (376-438)||(38620288-38620350)
chr8 (397-438)||(11962512-11962553)
chr8 (390-438)||(7453413-7453461)
chr8 (22-89)||(13580417-13580487)
chr8 (22-89)||(22930321-22930391)
chr8 (399-431)||(23339866-23339898)
[»] chr1 (9 HSPs)
chr1 (22-89)||(8246779-8246849)
chr1 (376-438)||(44732694-44732756)
chr1 (389-438)||(42490370-42490419)
chr1 (49-97)||(49763783-49763831)
chr1 (376-438)||(48607696-48607758)
chr1 (377-438)||(50746772-50746833)
chr1 (400-436)||(12374485-12374521)
chr1 (406-438)||(12404416-12404448)
chr1 (389-429)||(47930631-47930671)
[»] chr6 (7 HSPs)
chr6 (376-438)||(7545390-7545452)
chr6 (20-89)||(12174320-12174392)
chr6 (400-438)||(3294825-3294863)
chr6 (24-89)||(9815733-9815801)
chr6 (376-438)||(9888472-9888534)
chr6 (376-438)||(22574931-22574993)
chr6 (389-438)||(8297688-8297737)
[»] scaffold0121 (1 HSPs)
scaffold0121 (378-438)||(12055-12115)


Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 20 - 431
Target Start/End: Original strand, 41442510 - 41442917
Alignment:
Q  20 ataattaatcaaagtaaattaaaaagaagtatatctatattgtactgactaagtaaaaataataattttgatacccctnnnnnnnttgtggcctaaactc 119  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||| | |       |||||||||||||||    
T  41442510 ataattaatcaaagtaaattaaaaataagtatatctatattgtactgactaaataaaaataataattttaatactcttaaaaaaattgtggcctaaactc 41442609  T
Q  120 ccgctcctcccgtccgttctcagggccacccctgcaactcgaaccccttacatgtcaaaagtgacaaatgagaagagaccaatagagagactagagaaag 219  Q
     ||| ||||||||||    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41442610 tcgcccctcccgtcc----tcagggccacccctgcaacacgaaccccttacatgtcaaaagtgacaaatgagaagagaccaatagagagaccagagaaag 41442705  T
Q  220 ctgagtgttctttgtcactgcaatgtcaatgatgcaagcttatgtggcgtctagttgttgctgatctgtgttgacaggataggagagataagaaagtgag 319  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41442706 ctgagtgttctttgttactgcaatgtcaatgatgcaagcttatgtggcgtctagttgttgctgatctgtgttgacaggataggagagataagaaagtgag 41442805  T
Q  320 aaggacataaaaagtattttgtgttgatatgattatgatccatagacnnnnnnnnngtcaagcagtctcgtggttaaagttcacataatttaattgtgaa 419  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||          ||||| | | | |||| || |||||||| ||||||||||||||    
T  41442806 aaggacataaaaagtattttgtgttgatatgattatcatccatagactttttttttttcaagtaatgtagtgggtagagttcacacaatttaattgtgaa 41442905  T
Q  420 gaagtggggtgt 431  Q
    |||||| |||||    
T  41442906 gaagtgaggtgt 41442917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 36071616 - 36071685
Alignment:
Q  22 aattaatcaaagtaaattaaaaagaagtatatctatattgtactgact---aagtaaaaataataatttt 88  Q
    |||||||||||| ||||||||||||| ||||||||||| ||||| |||   |||||||||||||||||||    
T  36071616 aattaatcaaagaaaattaaaaagaaatatatctatatagtactaactatcaagtaaaaataataatttt 36071685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 55147885 - 55147955
Alignment:
Q  22 aattaatcaaagtaaattaaaaagaagtatatctatattgtactgac---taagtaaaaataataattttg 89  Q
    |||||||||||  ||||||||||||| ||||||||| ||||| ||||   |||||||||||||||||||||    
T  55147885 aattaatcaaaacaaattaaaaagaaatatatctatgttgtagtgactattaagtaaaaataataattttg 55147955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 438
Target Start/End: Original strand, 4958503 - 4958565
Alignment:
Q  376 gtcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    |||||| ||| | |||||||||| |||||||||||||||||| |||||||| |||| ||||||    
T  4958503 gtcaagtagtttagtggttaaagctcacataatttaattgtggagaagtggagtgtccggggt 4958565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 438
Target Start/End: Original strand, 13264221 - 13264283
Alignment:
Q  376 gtcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    |||||| ||||| |||| || || ||||| |||||||||||||||||||||||||| ||||||    
T  13264221 gtcaagtagtctagtggctagagctcacacaatttaattgtgaagaagtggggtgtccggggt 13264283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 438
Target Start/End: Complemental strand, 21935600 - 21935538
Alignment:
Q  376 gtcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    |||||| ||||| |||| ||||| ||||| |||||||||||| ||||||||||||| ||||||    
T  21935600 gtcaagtagtctagtggctaaagctcacacaatttaattgtggagaagtggggtgtccggggt 21935538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 438
Target Start/End: Complemental strand, 34353902 - 34353840
Alignment:
Q  376 gtcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    |||||| || || ||||||| || |||||||||||||||||| ||||||||||||| ||||||    
T  34353902 gtcaagtagcctagtggttacagctcacataatttaattgtggagaagtggggtgtccggggt 34353840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 3643202 - 3643275
Alignment:
Q  20 ataattaatcaaagtaaattaaaaagaagtatatctatattgtact---gactaagtaaaaataataattttgat 91  Q
    |||||||||||| | ||||||||||||| ||||||||||| |||||    ||||||| |||||||||||||||||    
T  3643202 ataattaatcaatgcaaattaaaaagaaatatatctatatagtactaactactaagt-aaaataataattttgat 3643275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 434
Target Start/End: Original strand, 39697817 - 39697868
Alignment:
Q  383 agtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgttcg 434  Q
    ||||| || |||| || ||||| |||||||||||||||||||||||||||||    
T  39697817 agtctagtagttagagctcacacaatttaattgtgaagaagtggggtgttcg 39697868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 431
Target Start/End: Complemental strand, 42395350 - 42395295
Alignment:
Q  376 gtcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgt 431  Q
    |||||| ||||| |||| ||||| ||||| |||||||||||| |||||||||||||    
T  42395350 gtcaagtagtctagtggctaaagctcacacaatttaattgtggagaagtggggtgt 42395295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 436
Target Start/End: Complemental strand, 50730379 - 50730332
Alignment:
Q  389 gtggttaaagttcacataatttaattgtgaagaagtggggtgttcggg 436  Q
    |||||||||| ||||| |||||||||||| ||||||||||||| ||||    
T  50730379 gtggttaaagctcacacaatttaattgtggagaagtggggtgtccggg 50730332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 438
Target Start/End: Complemental strand, 30057345 - 30057283
Alignment:
Q  376 gtcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    |||||| || || ||||||| || ||||| |||||||||||| ||||||||||||| ||||||    
T  30057345 gtcaagtagcctagtggttagagctcacacaatttaattgtggagaagtggggtgtccggggt 30057283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 438
Target Start/End: Complemental strand, 37310150 - 37310088
Alignment:
Q  376 gtcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    |||||| ||||| ||||||| | |||||| ||||||||| |||||||||||| ||| ||||||    
T  37310150 gtcaagtagtctagtggttagaattcacacaatttaattatgaagaagtgggatgtacggggt 37310088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 438
Target Start/End: Complemental strand, 43512536 - 43512487
Alignment:
Q  389 gtggttaaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    ||||||||||||| |||| ||||| ||||||||| |||||||||| ||||    
T  43512536 gtggttaaagttcgcatattttaaatgtgaagaaatggggtgttccgggt 43512487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 13578430 - 13578474
Alignment:
Q  394 taaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    ||||| ||||| |||||||||||| ||||||||||||| ||||||    
T  13578430 taaagctcacacaatttaattgtggagaagtggggtgtccggggt 13578474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 3940710 - 3940778
Alignment:
Q  22 aattaatcaaagtaaattaaaaagaagtatatctatattgtact---gactaagtaaaaataataattt 87  Q
    |||||||||||||||||||||||||| |||||||||||| ||||    |||||||||||||||||||||    
T  3940710 aattaatcaaagtaaattaaaaagaaatatatctatattatacttactactaagtaaaaataataattt 3940778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 377 - 438
Target Start/End: Complemental strand, 9498088 - 9498027
Alignment:
Q  377 tcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    ||||| ||||| |||| || ||||||||||||||||||||| ||||||||||||| ||||||    
T  9498088 tcaagtagtctagtggctatagttcacataatttaattgtggagaagtggggtgtccggggt 9498027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 438
Target Start/End: Original strand, 28424278 - 28424340
Alignment:
Q  376 gtcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    |||||| ||||| ||||||| || ||||| |||||||||||||||||||||||| | ||||||    
T  28424278 gtcaagtagtctagtggttagagctcacacaatttaattgtgaagaagtggggtttccggggt 28424340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 35812684 - 35812606
Alignment:
Q  22 aattaatcaaagtaaattaaaaagaagtatatctatattgtactgacta---agtaaaaataataattttgatacccct 97  Q
    |||| |||||||  |||||||||||| ||||||||||| ||||| | ||   ||||||||||||||||||||| |||||    
T  35812684 aattgatcaaagcgaattaaaaagaaatatatctatatagtactaattattaagtaaaaataataattttgatgcccct 35812606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 21828230 - 21828153
Alignment:
Q  23 attaatcaaagtaaattaaaaagaagtatatctatattgtactgacta---agtaaaaataataattttgatacccct 97  Q
    ||||||||||  || |||||||||| ||||||||| ||||| ||||||   |||||||||||||||||| || |||||    
T  21828230 attaatcaaaacaagttaaaaagaaatatatctattttgtagtgactatgaagtaaaaataataatttttatgcccct 21828153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 438
Target Start/End: Original strand, 24061276 - 24061338
Alignment:
Q  376 gtcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    |||||| ||||| |||| || || ||||| |||||||||||| |||||||| |||||||||||    
T  24061276 gtcaagtagtctagtggctagagctcacacaatttaattgtggagaagtggagtgttcggggt 24061338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 434
Target Start/End: Complemental strand, 28501280 - 28501222
Alignment:
Q  376 gtcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgttcg 434  Q
    |||||| ||| | ||||||| || ||||| |||||||||||| ||||||||||||||||    
T  28501280 gtcaagtagtttagtggttagagctcacacaatttaattgtggagaagtggggtgttcg 28501222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 438
Target Start/End: Complemental strand, 28805423 - 28805361
Alignment:
Q  376 gtcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    |||||| ||||| ||||||| || ||||  |||||||||||| ||||||||||||| ||||||    
T  28805423 gtcaagtagtctagtggttagagctcactcaatttaattgtggagaagtggggtgtccggggt 28805361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 9712163 - 9712207
Alignment:
Q  394 taaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    ||||| ||||| |||||||||||| ||||||||||||| ||||||    
T  9712163 taaagctcacacaatttaattgtggagaagtggggtgtccggggt 9712207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 21129386 - 21129434
Alignment:
Q  22 aattaatcaaagtaaattaaaaagaagtatatctatattgtactgacta 70  Q
    |||||||||||  ||||||||||||| ||||||||| ||||| ||||||    
T  21129386 aattaatcaaaccaaattaaaaagaaatatatctattttgtagtgacta 21129434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 26912397 - 26912349
Alignment:
Q  22 aattaatcaaagtaaattaaaaagaagtatatctatattgtactgacta 70  Q
    ||||||||||||  |||||||||||| ||||||||||| ||||| ||||    
T  26912397 aattaatcaaagcgaattaaaaagaaatatatctatatagtactaacta 26912349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 95
Target Start/End: Original strand, 26914450 - 26914478
Alignment:
Q  67 actaagtaaaaataataattttgataccc 95  Q
    |||||||||||||||||||||||||||||    
T  26914450 actaagtaaaaataataattttgataccc 26914478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 436
Target Start/End: Complemental strand, 44616725 - 44616665
Alignment:
Q  376 gtcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgttcggg 436  Q
    |||||| ||||| ||||||| || ||||| |||||||||||| |||||||| |||| ||||    
T  44616725 gtcaagtagtctagtggttagagctcacacaatttaattgtggagaagtggagtgtccggg 44616665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 376 - 438
Target Start/End: Original strand, 33041810 - 33041872
Alignment:
Q  376 gtcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    |||||||||||| ||||||| || ||||| ||||||||||||||||||| |||||||||||||    
T  33041810 gtcaagcagtctagtggttagagctcacacaatttaattgtgaagaagtagggtgttcggggt 33041872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 438
Target Start/End: Complemental strand, 4183299 - 4183237
Alignment:
Q  376 gtcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    |||||| || || |||| || |||||||| |||||||||||| |||||||| |||||||||||    
T  4183299 gtcaagtagcctagtggctagagttcacacaatttaattgtggagaagtggagtgttcggggt 4183237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 5163864 - 5163784
Alignment:
Q  20 ataattaatcaaagtaaattaaaaagaagtatatctatattgtactgacta---agtaaaaataataattttgatacccct 97  Q
    |||||||||||||   |||||||||||  ||||| ||||| ||||| ||||   ||||||||||||||||||||| |||||    
T  5163864 ataattaatcaaaccgaattaaaaagatatatatttatatagtactaactactaagtaaaaataataattttgatgcccct 5163784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 438
Target Start/End: Original strand, 28153089 - 28153151
Alignment:
Q  376 gtcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    |||||| ||||| |||| || || ||||| |||||||||||| ||||||||||||| ||||||    
T  28153089 gtcaagtagtctagtggctagagctcacacaatttaattgtggagaagtggggtgtccggggt 28153151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 17271349 - 17271400
Alignment:
Q  49 tatatctatattgtactgacta---agtaaaaataataattttgatacccct 97  Q
    |||||||||||| |||||||||   ||||||||||||||||||| |||||||    
T  17271349 tatatctatattatactgactactaagtaaaaataataattttggtacccct 17271400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 16570555 - 16570627
Alignment:
Q  22 aattaatcaaagtaaattaaaaagaagtatatctatattgtactgac---taagtaaaaataataattttgat 91  Q
    ||||||||||||| |||||||||||| ||||||||||| ||||  ||   |||||||||||||||||||||||    
T  16570555 aattaatcaaagtgaattaaaaagaaatatatctatatggtaccaactaataagtaaaaataataattttgat 16570627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 438
Target Start/End: Original strand, 9688627 - 9688681
Alignment:
Q  384 gtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    |||| ||||||| || ||||| ||||||||||||||||||||  |||||||||||    
T  9688627 gtctagtggttagagctcacacaatttaattgtgaagaagtgtagtgttcggggt 9688681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 426
Target Start/End: Original strand, 22931564 - 22931614
Alignment:
Q  376 gtcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtgg 426  Q
    |||||| ||||| ||||||| || ||||| |||||||||||||||||||||    
T  22931564 gtcaagtagtctagtggttagagctcacacaatttaattgtgaagaagtgg 22931614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 438
Target Start/End: Complemental strand, 42916512 - 42916450
Alignment:
Q  376 gtcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    |||||| ||| | |||| ||||| ||||| |||||||||||| ||||||||||||| ||||||    
T  42916512 gtcaagtagtttagtggctaaagctcacacaatttaattgtggagaagtggggtgtccggggt 42916450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 502872 - 502803
Alignment:
Q  22 aattaatcaaagtaaattaaaaagaagtatatctatattgtactgact--aagtaaaaataataattttgat 91  Q
    ||||||||||||  | |||||||||| |||||||||||  |||| |||  ||||||||||||||||||||||    
T  502872 aattaatcaaag--agttaaaaagaaatatatctatataatactaactctaagtaaaaataataattttgat 502803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Complemental strand, 546912 - 546867
Alignment:
Q  389 gtggttaaagttcacataatttaattgtgaagaagtggggtgttcg 434  Q
    ||||||| || ||||| |||||||||||||||||||||| ||||||    
T  546912 gtggttagagctcacacaatttaattgtgaagaagtgggatgttcg 546867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 438
Target Start/End: Complemental strand, 16789192 - 16789131
Alignment:
Q  377 tcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    ||||| ||||| |||| || || ||||| |||||||||||| ||||||||||||| ||||||    
T  16789192 tcaagtagtctagtggctagagctcacacaatttaattgtggagaagtggggtgtccggggt 16789131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 436
Target Start/End: Complemental strand, 16891469 - 16891409
Alignment:
Q  376 gtcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgttcggg 436  Q
    |||||| ||||| |||| || || ||||| |||||||||||| |||||||| |||||||||    
T  16891469 gtcaagtagtctagtggctagagctcacacaatttaattgtggagaagtggagtgttcggg 16891409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 52706724 - 52706796
Alignment:
Q  26 aatcaaagtaaattaaaaagaagtatatctatattgtactg---actaagtaaaaataataattttgataccc 95  Q
    |||||||| ||||||||||||| |||||||||||||||  |   ||||| |||||||||||||||||||||||    
T  52706724 aatcaaagcaaattaaaaagaaatatatctatattgtaaagactactaaataaaaataataattttgataccc 52706796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 15670988 - 15670919
Alignment:
Q  22 aattaatcaaagtaaattaaaaagaagtatatctatattgtact---gactaagtaaaaataataatttt 88  Q
    |||||||||||  ||||||||||||| ||||||||||||||| |    ||||||||||||||||||||||    
T  15670988 aattaatcaaaacaaattaaaaagaaatatatctatattgtaataactactaagtaaaaataataatttt 15670919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 438
Target Start/End: Complemental strand, 19879300 - 19879262
Alignment:
Q  400 tcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  19879300 tcacacaatttaattgtgaagaagtggggtgttcggggt 19879262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 431
Target Start/End: Complemental strand, 4860284 - 4860229
Alignment:
Q  376 gtcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgt 431  Q
    |||||| ||||| ||||||| || ||||| |||||||||||| |||||||||||||    
T  4860284 gtcaagtagtctagtggttagagctcacacaatttaattgtggagaagtggggtgt 4860229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 431
Target Start/End: Complemental strand, 4880292 - 4880237
Alignment:
Q  376 gtcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgt 431  Q
    |||||| ||||| ||||||| || ||||| |||||||||||| |||||||||||||    
T  4880292 gtcaagtagtctagtggttagagctcacacaatttaattgtggagaagtggggtgt 4880237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 434
Target Start/End: Complemental strand, 24430272 - 24430214
Alignment:
Q  376 gtcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgttcg 434  Q
    |||||| ||||| |||| || || ||||| |||||||||||| ||||||||||||||||    
T  24430272 gtcaagtagtctagtggctagagctcacacaatttaattgtggagaagtggggtgttcg 24430214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 54417081 - 54417153
Alignment:
Q  22 aattaatcaaagtaaattaaaaagaagtatatctatattgtactgact---aagtaaaaataataattttgat 91  Q
    ||||||||||||| |||||||| ||| | ||||||||| | ||| |||   ||||||||||||||||||||||    
T  54417081 aattaatcaaagtgaattaaaaggaaatgtatctatatagcactaactaccaagtaaaaataataattttgat 54417153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 33682721 - 33682769
Alignment:
Q  22 aattaatcaaagtaaattaaaaagaagtatatctatattgtactgacta 70  Q
    ||||||||||||| |||||||||||| ||||||||| | ||||| ||||    
T  33682721 aattaatcaaagtgaattaaaaagaaatatatctatctagtactaacta 33682769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 434
Target Start/End: Complemental strand, 54447439 - 54447395
Alignment:
Q  390 tggttaaagttcacataatttaattgtgaagaagtggggtgttcg 434  Q
    |||||| |||||||| |||||||||||| ||||||||| ||||||    
T  54447439 tggttagagttcacacaatttaattgtggagaagtgggatgttcg 54447395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 26835653 - 26835723
Alignment:
Q  22 aattaatcaaagtaaattaaaaagaagtatatctatattgtactgac---taagtaaaaataataattttg 89  Q
    ||||||| |||| ||||||||||||| ||||| ||||||||||| ||   |||||||||||||||||||||    
T  26835653 aattaataaaagaaaattaaaaagaaatatatttatattgtactaactattaagtaaaaataataattttg 26835723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 438
Target Start/End: Complemental strand, 5571017 - 5570955
Alignment:
Q  376 gtcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    |||||| ||||| |||| || || |||||||||||||||||| ||||||||||||| ||||||    
T  5571017 gtcaagtagtctagtggctagagctcacataatttaattgtggagaagtggggtgtccggggt 5570955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 431
Target Start/End: Original strand, 24480768 - 24480823
Alignment:
Q  376 gtcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgt 431  Q
    |||||| ||||| |||| || || |||||||||||||||||| |||||||||||||    
T  24480768 gtcaagtagtctagtggctagagctcacataatttaattgtggagaagtggggtgt 24480823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 438
Target Start/End: Complemental strand, 11787274 - 11787212
Alignment:
Q  376 gtcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    |||||| || || ||||||| || |||||||||||||||||| |||||||| |||| ||||||    
T  11787274 gtcaagtagcctagtggttagagctcacataatttaattgtggagaagtggagtgtccggggt 11787212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Original strand, 17072534 - 17072572
Alignment:
Q  400 tcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  17072534 tcacacaatttaattgtggagaagtggggtgttcggggt 17072572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Complemental strand, 17575737 - 17575699
Alignment:
Q  400 tcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  17575737 tcacacaatttaattgtggagaagtggggtgttcggggt 17575699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 22486654 - 22486730
Alignment:
Q  22 aattaatcaaagtaaattaaaaagaagtatatctatattgtactg---actaagtaaaaataataattttgataccc 95  Q
    |||||||||||  |||||||||||||  |||||||| ||||| ||   ||||||||| ||||||||||||| |||||    
T  22486654 aattaatcaaaacaaattaaaaagaaacatatctattttgtagtgactactaagtaagaataataattttggtaccc 22486730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 28376713 - 28376657
Alignment:
Q  36 aattaaaaagaagtatatctatattgtactgacta---agtaaaaataataattttg 89  Q
    |||||||||||| ||||||||||| ||||| ||||   |||||||||||||||||||    
T  28376713 aattaaaaagaaatatatctatatagtactaactactaagtaaaaataataattttg 28376657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 438
Target Start/End: Complemental strand, 29716983 - 29716921
Alignment:
Q  376 gtcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    |||||| || |||||||||| || ||||| |||||||||||| |||||||| |||| ||||||    
T  29716983 gtcaagtagcctcgtggttagagctcacacaatttaattgtggagaagtggagtgtccggggt 29716921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 438
Target Start/End: Original strand, 38620288 - 38620350
Alignment:
Q  376 gtcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    |||||| || || |||| || |||||||| |||||||||||| |||||||| |||||||||||    
T  38620288 gtcaagtagcctagtggctagagttcacacaatttaattgtggagaagtggagtgttcggggt 38620350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 438
Target Start/End: Original strand, 11962512 - 11962553
Alignment:
Q  397 agttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    |||||| |||||||||||||| |||||||| |||||||||||    
T  11962512 agttcatataatttaattgtggagaagtggagtgttcggggt 11962553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 438
Target Start/End: Complemental strand, 7453461 - 7453413
Alignment:
Q  390 tggttaaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    |||||| |||||||| ||||||||| || ||||||||||||| ||||||    
T  7453461 tggttagagttcacacaatttaattatggagaagtggggtgtccggggt 7453413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 13580417 - 13580487
Alignment:
Q  22 aattaatcaaagtaaattaaaaagaagtatatctatattgtactgac---taagtaaaaataataattttg 89  Q
    ||||||||||||  |||||||||||| ||||| |||||  |||| ||   |||||||||||||||||||||    
T  13580417 aattaatcaaagcgaattaaaaagaaatatatttatataatactaactattaagtaaaaataataattttg 13580487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 22930391 - 22930321
Alignment:
Q  22 aattaatcaaagtaaattaaaaagaagtatatctatattgtactgac---taagtaaaaataataattttg 89  Q
    ||||||||||||  |||||||||||  ||||||||||| ||||| ||   ||||||||||| |||||||||    
T  22930391 aattaatcaaagcgaattaaaaagatatatatctatatagtactaactattaagtaaaaattataattttg 22930321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 431
Target Start/End: Original strand, 23339866 - 23339898
Alignment:
Q  399 ttcacataatttaattgtgaagaagtggggtgt 431  Q
    |||||| ||||||||||||||||||||||||||    
T  23339866 ttcacacaatttaattgtgaagaagtggggtgt 23339898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 8246779 - 8246849
Alignment:
Q  22 aattaatcaaagtaaattaaaaagaagtatatctatattgtactgac---taagtaaaaataataattttg 89  Q
    |||||||||||  ||||||||||||| ||||||||||| ||||| ||   |||||||||||||||||||||    
T  8246779 aattaatcaaatcaaattaaaaagaaatatatctatatagtactaactattaagtaaaaataataattttg 8246849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 438
Target Start/End: Complemental strand, 44732756 - 44732694
Alignment:
Q  376 gtcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    |||||| ||||| |||| || |||||||| |||||||||||| ||||||||||||| ||||||    
T  44732756 gtcaagtagtctagtggctagagttcacacaatttaattgtggagaagtggggtgtccggggt 44732694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 438
Target Start/End: Original strand, 42490370 - 42490419
Alignment:
Q  389 gtggttaaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    ||||||| |||||||| |||||||||||| ||||||||||||| ||||||    
T  42490370 gtggttagagttcacacaatttaattgtggagaagtggggtgtccggggt 42490419  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 49763783 - 49763831
Alignment:
Q  49 tatatctatattgtactgactaagtaaaaataataattttgatacccct 97  Q
    ||||| ||||| |||||||||| ||| ||||||||||||||||||||||    
T  49763783 tatatatatatagtactgactacgtacaaataataattttgatacccct 49763831  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 438
Target Start/End: Original strand, 48607696 - 48607758
Alignment:
Q  376 gtcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    |||||| || || |||| ||||| ||||| |||||||||||||| |||||| |||||||||||    
T  48607696 gtcaagtagcctagtggctaaagctcacacaatttaattgtgaaaaagtggagtgttcggggt 48607758  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 438
Target Start/End: Complemental strand, 50746833 - 50746772
Alignment:
Q  377 tcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    ||||| ||||| ||||||| || || || |||||||||||| ||||||||||||| ||||||    
T  50746833 tcaagtagtctagtggttagagctcgcacaatttaattgtggagaagtggggtgtccggggt 50746772  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 436
Target Start/End: Original strand, 12374485 - 12374521
Alignment:
Q  400 tcacataatttaattgtgaagaagtggggtgttcggg 436  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  12374485 tcacacaatttaattgtgaagaagtggggtgtccggg 12374521  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 406 - 438
Target Start/End: Complemental strand, 12404448 - 12404416
Alignment:
Q  406 aatttaattgtgaagaagtggggtgttcggggt 438  Q
    |||||||||||| ||||||||||||||||||||    
T  12404448 aatttaattgtggagaagtggggtgttcggggt 12404416  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 429
Target Start/End: Original strand, 47930631 - 47930671
Alignment:
Q  389 gtggttaaagttcacataatttaattgtgaagaagtggggt 429  Q
    ||||||| || ||||| ||||||||||||||||||||||||    
T  47930631 gtggttagagctcacacaatttaattgtgaagaagtggggt 47930671  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 438
Target Start/End: Complemental strand, 7545452 - 7545390
Alignment:
Q  376 gtcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    |||||| ||||| |||| || || ||||| |||||||||||| ||||||||||||||||||||    
T  7545452 gtcaagtagtctagtggctagagctcacacaatttaattgtggagaagtggggtgttcggggt 7545390  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 12174392 - 12174320
Alignment:
Q  20 ataattaatcaaagtaaattaaaaagaagtatatctatattgtact---gactaagtaaaaataataattttg 89  Q
    |||||||||||||   |||||||||||| ||||||||||| |||||    |||||||||||||||||||||||    
T  12174392 ataattaatcaaaacgaattaaaaagaaatatatctatatagtactaactactaagtaaaaataataattttg 12174320  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 438
Target Start/End: Complemental strand, 3294863 - 3294825
Alignment:
Q  400 tcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  3294863 tcacacaatttaattgtgaagaagtggggtgtccggggt 3294825  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 9815733 - 9815801
Alignment:
Q  24 ttaatcaaagtaaattaaaaagaagtatatctatattgtact---gactaagtaaaaataataattttg 89  Q
    ||||||||||  |||||||||||| ||||||||||| ||| |    |||||||||||||||||||||||    
T  9815733 ttaatcaaagcgaattaaaaagaaatatatctatatagtattaactactaagtaaaaataataattttg 9815801  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 438
Target Start/End: Original strand, 9888472 - 9888534
Alignment:
Q  376 gtcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    |||||| || || ||||||| || |||||||||||||||||| |||||||| |||| ||||||    
T  9888472 gtcaagtagcctagtggttagagctcacataatttaattgtggagaagtggagtgtccggggt 9888534  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 438
Target Start/End: Complemental strand, 22574993 - 22574931
Alignment:
Q  376 gtcaagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    |||||| ||||| ||||||| || ||||| |||||||||||| |||||||| |||| ||||||    
T  22574993 gtcaagtagtctagtggttagagctcacacaatttaattgtggagaagtggagtgtgcggggt 22574931  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 438
Target Start/End: Complemental strand, 8297737 - 8297688
Alignment:
Q  389 gtggttaaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    ||||||| || ||||| |||||||||||| ||||||||||||| ||||||    
T  8297737 gtggttagagctcacacaatttaattgtggagaagtggggtgtccggggt 8297688  T

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Target: scaffold0121 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 438
Target Start/End: Complemental strand, 12115 - 12055
Alignment:
Q  378 caagcagtctcgtggttaaagttcacataatttaattgtgaagaagtggggtgttcggggt 438  Q
    |||| ||||| |||| || |||||||| |||||||||||| |||||||| |||| ||||||    
T  12115 caagtagtctagtggctagagttcacacaatttaattgtggagaagtggagtgtccggggt 12055  T

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