View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9218_low_7 (Length: 434)

Name: NF9218_low_7
Description: NF9218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9218_low_7
NF9218_low_7
[»] chr6 (1 HSPs)
chr6 (115-407)||(11226960-11227252)


Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 115 - 407
Target Start/End: Original strand, 11226960 - 11227252
Alignment:
Q  115 tcaagtgatgagatgtattatgggaaattggttgacatcatagaacttgattactatggtaagctgagggttgtgcttttcaagtgtatttgggtagatg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  11226960 tcaagtgatgagatgtattatgggaaattggttgacatcatagaacttgattactatggtaagctgagggttgtgcttttcaagtgtgtttgggtagata 11227059  T
Q  215 ctagacctaacaagggaattaagattgatcaatttggaataccaagtgtgaatttctctcgcttgatacacactggtgtgaatgaagtagatgaatcatt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  11227060 ctagacctaacaagggaattaagattgatcaatttggaataccaagtgtgaatttctctagcttgatacacactggtgtgaatgaagtagatgaaccatt 11227159  T
Q  315 catccttgcaactgatgctagaatggtatattatgttgatgatccatttgaagaaggttggtcttgtgtaagtcatatgaagcctagagacat 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11227160 catccttgcaactgatgctagaatggtatattatgttgatgatccatttgaagaaggttggtcttgtgtaagtcatatgaagcctagagacat 11227252  T

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