View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9218_low_8 (Length: 393)

Name: NF9218_low_8
Description: NF9218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9218_low_8
NF9218_low_8
[»] chr2 (1 HSPs)
chr2 (19-383)||(45366716-45367080)
[»] chr7 (3 HSPs)
chr7 (48-189)||(23422575-23422719)
chr7 (61-108)||(619605-619652)
chr7 (52-80)||(26881707-26881735)
[»] chr6 (1 HSPs)
chr6 (51-108)||(9685130-9685187)
[»] scaffold0229 (1 HSPs)
scaffold0229 (48-108)||(7473-7533)
[»] chr1 (1 HSPs)
chr1 (48-108)||(1281465-1281525)
[»] chr5 (3 HSPs)
chr5 (53-108)||(19726768-19726823)
chr5 (52-153)||(26387936-26388037)
chr5 (53-105)||(15596367-15596419)
[»] chr3 (2 HSPs)
chr3 (75-178)||(26023606-26023712)
chr3 (54-108)||(26023705-26023760)
[»] chr4 (1 HSPs)
chr4 (120-200)||(19266573-19266653)


Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 383
Target Start/End: Original strand, 45366716 - 45367080
Alignment:
Q  19 gaatcggtatacgaaataaaatttatcacaaggatttaatttgtatacactgacgatgtaaaactttttcaaacatgcatccaatcaaatgagtcatgta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45366716 gaatcggtatacgaaataaaatttatcacaaggatttaatttgtatacactgacgatgtaaaactttttcaaacatgcatccaatcaaatgagtcatgta 45366815  T
Q  119 aatttgtggagatattttatgaactaacctataaaagcggcactacggtgtaatttgatttgacacatgtgtaagaaagtttcaccgtcaatgcatagaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45366816 aatttgtggagatattttatgaactaacctataaaagcggcactatggtgtaatttgatttgacacatgtgtaagaaagtttcaccgtcaatgcatagaa 45366915  T
Q  219 atgaatttctttatcacagatggattgtcgtaacagcacaaccagcaccaaatgttgttaacagttatcacgacagtattnnnnnnngagaagcaaattc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||    
T  45366916 atgaatttctttatcacagatggattgtcgtaacagcacaaccagcaccaaatgttgttaacagttatcacgacagtattaaaaaaagagaagcaaattc 45367015  T
Q  319 taactactgtaaaactaaattttaagattaagtgattccttgtgaaagtgtgaatagcagtatta 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45367016 taactactgtaaaactaaattttaagattaagtgattccttgtgaaagtgtgaatagcaatatta 45367080  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 48 - 189
Target Start/End: Original strand, 23422575 - 23422719
Alignment:
Q  48 aaggatttaatttgtatacactgacgatgtaaaactttttcaaacatgcatccaatcaaatga-gtcatgta--aatttgtggagatattttatgaacta 144  Q
    ||||||||||||||||||| | |||  ||||||||||||||| ||||||| ||| |||||| | ||||||||   |||||||| ||||||||| || |||    
T  23422575 aaggatttaatttgtatacgccgacagtgtaaaactttttcacacatgcagccattcaaatcatgtcatgtaggtatttgtggggatattttaggagcta 23422674  T
Q  145 acctataaaagcggcactacggtgtaatttgatttgacacatgtg 189  Q
    || |||||||| | ||||  ||||| | |||||| ||| ||||||    
T  23422675 acatataaaagtgacactttggtgtgacttgattagacgcatgtg 23422719  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 619652 - 619605
Alignment:
Q  61 gtatacactgacgatgtaaaactttttcaaacatgcatccaatcaaat 108  Q
    ||||||||||||  ||||||||||||||| |||||||| |||||||||    
T  619652 gtatacactgacactgtaaaactttttcacacatgcattcaatcaaat 619605  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 80
Target Start/End: Complemental strand, 26881735 - 26881707
Alignment:
Q  52 atttaatttgtatacactgacgatgtaaa 80  Q
    |||||||||||||||||||||||||||||    
T  26881735 atttaatttgtatacactgacgatgtaaa 26881707  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 9685187 - 9685130
Alignment:
Q  51 gatttaatttgtatacactgacgatgtaaaactttttcaaacatgcatccaatcaaat 108  Q
    |||||||||||| |||||||||||||||||||||||  | |||||||| |||||||||    
T  9685187 gatttaatttgtctacactgacgatgtaaaacttttctacacatgcattcaatcaaat 9685130  T

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Target: scaffold0229 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 7533 - 7473
Alignment:
Q  48 aaggatttaatttgtatacactgacgatgtaaaactttttcaaacatgcatccaatcaaat 108  Q
    |||||||||||||||||||||| ||  ||||||  ||||| | ||||||||||||||||||    
T  7533 aaggatttaatttgtatacacttacagtgtaaactttttttacacatgcatccaatcaaat 7473  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 1281525 - 1281465
Alignment:
Q  48 aaggatttaatttgtatacactgacgatgtaaaactttttcaaacatgcatccaatcaaat 108  Q
    |||||||||||||||||||||| ||  ||||||  ||||| | ||||||||||||||||||    
T  1281525 aaggatttaatttgtatacacttacagtgtaaactttttttacacatgcatccaatcaaat 1281465  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 19726768 - 19726823
Alignment:
Q  53 tttaatttgtatacactgacgatgtaaaactttttcaaacatgcatccaatcaaat 108  Q
    |||||||||||||||  |||| | ||||||||||| | ||||||||||||||||||    
T  19726768 tttaatttgtatacatcgacggtctaaaacttttttacacatgcatccaatcaaat 19726823  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 153
Target Start/End: Original strand, 26387936 - 26388037
Alignment:
Q  52 atttaatttgtatacactgacgatgtaaaactttttcaaacatgcatccaatcaaatga-gtcatgtaaatttgtggagatattttatgaactaacctat 150  Q
    ||||||||| ||||||| ||| ||||||   ||||| | ||||||||||||| |||| | | |||||| |||||||||||| |||||  |||||||||||    
T  26387936 atttaatttatatacaccgacaatgtaatttttttt-agacatgcatccaattaaatcacgccatgtatatttgtggagattttttagaaactaacctat 26388034  T
Q  151 aaa 153  Q
    |||    
T  26388035 aaa 26388037  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 15596367 - 15596419
Alignment:
Q  53 tttaatttgtatacactgacgatgtaaaactttttcaaacatgcatccaatca 105  Q
    ||||||| ||||||| |||| |||||||||| ||| | |||||||||||||||    
T  15596367 tttaattcgtatacattgacaatgtaaaactcttttacacatgcatccaatca 15596419  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 75 - 178
Target Start/End: Original strand, 26023606 - 26023712
Alignment:
Q  75 tgtaaaactttttcaaacatgcatccaatcaaatga-gtcatgt--aaatttgtggagatattttatgaactaacctataaaagcggcactacggtgtaa 171  Q
    |||||||| |||| | || ||||||||||||||| | |||| ||  | |||||| || |||||||| ||||||||||||||||| ||||||| ||| | |    
T  26023606 tgtaaaacctttttacacgtgcatccaatcaaatcatgtcacgtggatatttgtagacatattttaggaactaacctataaaagtggcactatggtatga 26023705  T
Q  172 tttgatt 178  Q
    |||||||    
T  26023706 tttgatt 26023712  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 26023760 - 26023705
Alignment:
Q  54 ttaatttgtatacactgacgatgtaaaactttttcaa-acatgcatccaatcaaat 108  Q
    |||||||||||||| |||||  |||||||||||| || ||||||||||||||||||    
T  26023760 ttaatttgtatacattgacggcgtaaaacttttttaacacatgcatccaatcaaat 26023705  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 19266573 - 19266653
Alignment:
Q  120 atttgtggagatattttatgaactaacctataaaagcggcactacggtgtaatttgatttgacacatgtgtaagaaagttt 200  Q
    |||||||||||||||| |  ||||||| | |||||| ||||||   ||| ||||||||| || |||||||||| |||||||    
T  19266573 atttgtggagatatttaagtaactaacttgtaaaagtggcactttcgtgcaatttgattggatacatgtgtaaaaaagttt 19266653  T

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