View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9218_low_9 (Length: 380)
Name: NF9218_low_9
Description: NF9218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9218_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 23934751 - 23935113
Alignment:
| Q |
1 |
ccacttttcttcactttcccatcttacaccaaatgttacgacgtcagcactcagtttttacttggaagcagtctcatgatatctccggtgctcgaacaag |
100 |
Q |
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| T |
23934751 |
ccacttttcttcactttcccatcttacaccaaatgttacgacgtcagcactcagtttttactcggaagcagtctcatgatatctccagtgctcgaacaag |
23934850 |
T |
|
| Q |
101 |
gaaaaacacaagtgaaagcattgtttcctcctggtagttggtacagtttactcgattggactcacacaatcacatcaacaggcggaacttatgttacact |
200 |
Q |
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| T |
23934851 |
gaaaaacacaagtgaaagcgttgtttcctcccggtagttggtacagtttactcgattggactcacaccatcacatcaacaggcggaacttatgttacact |
23934950 |
T |
|
| Q |
201 |
tgatgcacctcttcatgtggtgaatgttcatttatatcagaacacaattctaccaatgcagcaaggtggattgatctcaaaggatgcgagaaagactccg |
300 |
Q |
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| T |
23934951 |
tgatgcacctcttcatgtggtgaatgttcatttatatcagaacacaattctaccaatgcagcaaggtggattgatctcaaaggatgctagaaagactccg |
23935050 |
T |
|
| Q |
301 |
ttcacgctcgttgttacattcccggctggcgcatcagaaggagatgctaaaggaacacttttc |
363 |
Q |
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| T |
23935051 |
ttcacgctcattgttacattcccggctggcgcatcagaaggagatgctaaaggaacacttttc |
23935113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 269
Target Start/End: Complemental strand, 50119998 - 50119773
Alignment:
| Q |
44 |
tcagcactcagtttttacttggaagcagtctcatgatatctccggtgctcgaacaaggaaaaacacaagtgaaagcattgtttcctcctggtagttggta |
143 |
Q |
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| T |
50119998 |
tcagcactcagttcttacttgggagcagtttaatgatttctcctgttcttgagccagggaaaacagaagttaaagcactttttcctcctggaacatggta |
50119899 |
T |
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| Q |
144 |
cagtttactcgattggactcacacaatcacatcaacaggcggaacttatgttacacttgatgcacctcttcatgtggtgaatgttcatttatatcagaac |
243 |
Q |
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||||||| | |||| ||| || || |||| || ||||| ||||| || ||||||||||| | ||||| || ||||| |||||||||||||| |
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| T |
50119898 |
cagtttatttgatttgacacaagtcattgtttcaaaagacggaaactatgtgactcttgatgcacccttgcatgttgtcaatgtgcatttatatcagaat |
50119799 |
T |
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| Q |
244 |
acaattctaccaatgcagcaaggtgg |
269 |
Q |
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|| ||||| || ||||| |||||||| |
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| T |
50119798 |
actattcttcctatgcaacaaggtgg |
50119773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 292
Target Start/End: Complemental strand, 50109838 - 50109760
Alignment:
| Q |
214 |
catgtggtgaatgttcatttatatcagaacacaattctaccaatgcagcaaggtggattgatctcaaaggatgcgagaa |
292 |
Q |
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|||||||| |||||||| || ||||| || | |||||||||||||| ||||||||| |||| || |||||||| |||| |
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| T |
50109838 |
catgtggtcaatgttcacttgtatcaaaattccattctaccaatgcaacaaggtggaatgatatctaaggatgctagaa |
50109760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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