View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9219_high_15 (Length: 265)
Name: NF9219_high_15
Description: NF9219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9219_high_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 65 - 258
Target Start/End: Original strand, 7234863 - 7235059
Alignment:
| Q |
65 |
gacctcatgtgaccacctaatgatttaccagaagcaaaactttttctgcagaatttgcacacatgtttcaatttcatcacttcttgatcttcttccattg |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7234863 |
gacctcatgtgaccacctaatgatttaccagaagcaaaactttttctgcagaatttgcacacatgtttcaatttcatcacttcttgatcttcttccattg |
7234962 |
T |
|
| Q |
165 |
ttgaaaccac-aaaacttcaagaattaactactaaaagagtaatctttatcagt--nnnnnnnnnnccaaactttgaaacagaatcaataacaccaa |
258 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7234963 |
ttgaaaccacaaaaacttcaagaattaactactaaaagagtaatctttatcagtaaaaaaaaaaaaccaaactttgaaacagaatcaataacaccaa |
7235059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 104 - 258
Target Start/End: Complemental strand, 30641756 - 30641611
Alignment:
| Q |
104 |
ctttttctgcagaatttgcacacatgtttcaatttcatcacttcttgatcttcttccattgttgaaaccacaaaac-ttcaagaattaactactaaaaga |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| |
|
|
| T |
30641756 |
ctttttctgcagaatttgcacacatgtttca------tcatttcttgatcttcttccattgttgaaac-acaaaaccttcaagaattaaccactaaaaga |
30641664 |
T |
|
| Q |
203 |
gtaatctttatcagtnnnnnnnnnnccaaactttgaaacagaatcaataacaccaa |
258 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
30641663 |
gtaatatttatcagt---aaaaaaaccaaactttgaaacagaatcaatgacaccaa |
30641611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 202
Target Start/End: Original strand, 26365657 - 26365749
Alignment:
| Q |
104 |
ctttttctgcagaatttgcacacatgtttcaatttcatcacttcttgatcttcttccattgttgaaaccacaaaa-cttcaagaattaactactaaaaga |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| |
|
|
| T |
26365657 |
ctttttctgcagaatttgcacacatgtttca------tcatttcttgatcttcttccattgttgaaa-cacaaaaccttcaagaattaaccactaaaaga |
26365749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 45405248 - 45405320
Alignment:
| Q |
65 |
gacctcatgtgaccacctaatgatttaccagaagcaaaactttttctgcagaatttgcacacatgtttcaatt |
137 |
Q |
| |
|
|||||||||||||| ||||| ||| ||||| ||| ||| ||||| || ||||||||||| ||||||| |||| |
|
|
| T |
45405248 |
gacctcatgtgacctcctaaagatctaccacaaggaaagcttttgctacagaatttgcaagcatgtttgaatt |
45405320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University