View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9219_high_2 (Length: 738)
Name: NF9219_high_2
Description: NF9219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9219_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 9 - 444
Target Start/End: Complemental strand, 38396553 - 38396140
Alignment:
| Q |
9 |
ttggtgtgtgtgtgaagtgttataactcatcaagttgtgatggtgagaggtacgtgtattaagaatgtgagcaaaaccatctttatcaatcaagccctaa |
108 |
Q |
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| T |
38396553 |
ttggtgtgtgtgtgaagtgttataactcatcaagttgtgatggtgagaggtacgtgtattaagaatgtgagcaaaaccatctttatcaatcaagccctaa |
38396454 |
T |
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| Q |
109 |
tgagagtgctaatgctaactccaaaatcaaataatgtaacgnnnnnnngacttctctctctcttcctgtcaatttctctcagcttggctagctaattata |
208 |
Q |
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| T |
38396453 |
tgagagtgctaatgctaactccaaaatcaaataatgtaacg-ttttttgacttctctctctcttcctgtcaatttctctcagcttggctagctaattata |
38396355 |
T |
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| Q |
209 |
tttatcatggtggcctgtgctttgttgagctaagcatatacaaatcaatgatagagacattgttnnnnnnnnctaattcaaattaaaaactagtacatga |
308 |
Q |
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| T |
38396354 |
tttatcatggtggcctgtgctttgttgagctaagcatatacaaatcaatgatagagacattgttaaaaaaaactaattcaaattaaaaacta-------- |
38396263 |
T |
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| Q |
309 |
tgatgtaatgtatatggtaaatgtaagtaagtgatgagggagtaaaagcattttcgtgttacacgtaaagtgtacctattaaccttagggagatggggtg |
408 |
Q |
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| T |
38396262 |
---------gtatatggtaaat----gtaagtgatgagggagtaaaagcatttttgtgttacacgtaaagtgtacctattaaccttagggagatggggtg |
38396176 |
T |
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| Q |
409 |
gggttgatgaaaaaagttagattagatcagacggtg |
444 |
Q |
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| T |
38396175 |
gggttgatggaaaaagttagaatagatcggacggtg |
38396140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 507 - 705
Target Start/End: Complemental strand, 38396076 - 38395878
Alignment:
| Q |
507 |
gttggaggggactggtgatcacagttgactacttgacttgacttatggtgaaatcaaatgaaaagtgacacgtgtcgattgattaagtggggggagaaca |
606 |
Q |
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| T |
38396076 |
gttggaggggactggtgatcacagttgactacttgacttgacttatggtgaaatcaaacgaaaagtgacacgtgtcgattgattaagtggggggagaaca |
38395977 |
T |
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| Q |
607 |
ttataatccacctgatgtttttgtgtttgggcaatcatgtgaacttaaccttaagaaggtgaaccctcatagtcgtaggtggttcgtactacctttatg |
705 |
Q |
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| T |
38395976 |
ttataatccacctgatgtttttgtgtttgggcaatcatgtgaacttaaccttaagaaggtgaaccctcatagtcgtaggtggttcgtactacctttatg |
38395878 |
T |
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