View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9219_low_10 (Length: 534)
Name: NF9219_low_10
Description: NF9219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9219_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 20 - 525
Target Start/End: Original strand, 49423170 - 49423675
Alignment:
| Q |
20 |
cgcggagcactagaattttgaaagggaactacctcgtataattaccgattccttatgacttaactgcccagtgacgactcacatttctcgattcctttta |
119 |
Q |
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| T |
49423170 |
cgcggagcactagaattttgaaagggaactacctcggataattaccgattccttatgacttaactgcccagtgacgactcacatttctcgattcctttta |
49423269 |
T |
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| Q |
120 |
gaaatcaaatatttgtttaattttgtccattcttctgtgccaaaaagaaaagatagcacatgacaaagatgagaaaaactaatatgcaacgtttaccctc |
219 |
Q |
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| T |
49423270 |
gaaatcaaatatttgtttaattttgtccattcttctgtgccaaaaagaaaagatagcacatgacaaagatgagaaaaactaatatgcaacgtttaccctc |
49423369 |
T |
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| Q |
220 |
aaaaaacatggatctaggtaattgaaatcataaggaagaataaagaggttgacaagttttaaggataannnnnnnncttaacatatacaaggagacaagg |
319 |
Q |
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| T |
49423370 |
aaaaaacatggatctaggtaattgaaatcataaggaagaataaagaggttgacaagttttaaggataattttttttcttaacatatacaaggagacaagg |
49423469 |
T |
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| Q |
320 |
ttagcagttcaatccaccaaacccagcagctgcatggtagaacaagtaaaacagaggatagatgaaccattatttaaactcagcgggcaaaaatcaattg |
419 |
Q |
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| T |
49423470 |
ttagcagttcaatccatcaaacctagcagctgcatggtagaacaagtaaaacagaggatagatgaaccattatttaaactcagcgggcaaaaatcaattg |
49423569 |
T |
|
| Q |
420 |
atgggaatagtttgggagatcaactactcgtttaatctttgtccatgctgtaaatcgagtcatggcagttagaaaggcttctgtgagcttggtgtttgtg |
519 |
Q |
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| T |
49423570 |
atggaaatagtttgggagatcaactactcgtttaatctttgtccatgctgtaaatcgagtcatggcagttagaaaggcttctgtgagcttggtgtttgtg |
49423669 |
T |
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| Q |
520 |
tctctg |
525 |
Q |
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| T |
49423670 |
tgtctg |
49423675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 414 - 519
Target Start/End: Original strand, 49431982 - 49432085
Alignment:
| Q |
414 |
caattgatgggaatagtttgggagatcaactactcgtttaatctttgtccatgctgtaaatcgagtcatggcagttagaaaggcttctgtgagcttggtg |
513 |
Q |
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| T |
49431982 |
caattgatgaaaattgtttgggagatcaactactcgtttattttttgtacatgctttaaat-gagtcatggcagttagataggattctg-cagcttcgtg |
49432079 |
T |
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| Q |
514 |
tttgtg |
519 |
Q |
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| T |
49432080 |
tttgtg |
49432085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 49425448 - 49425531
Alignment:
| Q |
109 |
gattccttttagaaatcaaatatttgtttaat-tttgtccattcttctgtgccaaaaagaaaagatagcacatgacaaagatga |
191 |
Q |
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| T |
49425448 |
gattcctttgagaaataaaatatttgtttaatctttgtccatgcttctgtgttaaagagaaaagacaacatatgacaaagatga |
49425531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 361
Target Start/End: Original strand, 49425674 - 49425711
Alignment:
| Q |
324 |
cagttcaatccaccaaacccagcagctgcatggtagaa |
361 |
Q |
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| T |
49425674 |
cagttcaatccaccaaacccagcagttgcatgttagaa |
49425711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 49431904 - 49431953
Alignment:
| Q |
238 |
taattgaaatcataaggaagaataaagaggttgacaagttttaaggataa |
287 |
Q |
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| T |
49431904 |
taattgaagtcataagcaagcaaaaagaagttgacaagttttaaggataa |
49431953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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