View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9219_low_13 (Length: 532)
Name: NF9219_low_13
Description: NF9219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9219_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 490; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 18 - 515
Target Start/End: Original strand, 3302914 - 3303411
Alignment:
| Q |
18 |
aaggagaggctttgtagaaattgttcggttgattcaacataatattcagagttttgcacaaagcaattgcaaacgcaaggctttggtaaccatctcattt |
117 |
Q |
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| T |
3302914 |
aaggagaggctttgtagaaattgttcggttgattcaacataatattcagagttttgcacaaagcaattgcaaacgcaaggctttggtaaccatctcattt |
3303013 |
T |
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| Q |
118 |
gactgaggtgtgtaactcggtaggagttaaaattattggtaacaagcaaattcggccctcccctgctgtcaccaattgctgccatcacctaggcctgctg |
217 |
Q |
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| T |
3303014 |
gactgaggtgtgtaactcggtaggagttaaaattattggtaacaagcaaattcggccctcccctgctgtcaccaattgctgccatcacctaggcctgctg |
3303113 |
T |
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| Q |
218 |
gcttctcctcctttttctgttgctatcaatgttgtcaaaatcaatatttacctagggttgagacttgagagtgggtgaatgataataataggattgtggc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3303114 |
gcttctcctcctttttctgttgctatcaatgttgtcaaaatcaatatttacctagggttgagacttgagagtgggtgaatgataataataggattgtggc |
3303213 |
T |
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| Q |
318 |
acagattctaagttccttcttaaaattcaaaatgttaccttaaacactcacgcacatgcctgatagaaaataagtaataacatagataagcaaaatgacc |
417 |
Q |
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| T |
3303214 |
acagattctaagttccttcttaaaattcaaaatgttaccttaaacactcacgcacatgcctgatagaaaataagtaataacatagataagcaaaatgacc |
3303313 |
T |
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| Q |
418 |
tctaaatcatattcacaaggtcacatacaactgatgatgagtaaatgagtcacataacataagtttttgacaacactgtcaatgagtcacataacaca |
515 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3303314 |
tctaaatcatattcacaaggtcacatacaactcatgatgagtaaatgagtcacataacataagtttttgacaacactgccaatgagtcacataacaca |
3303411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 167
Target Start/End: Original strand, 3291074 - 3291197
Alignment:
| Q |
44 |
ggttgattcaacataatattcagagttttgcacaaagcaattgcaaacgcaaggctttggtaaccatctcatttgactgaggtgtgtaactcggtaggag |
143 |
Q |
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||||||||| |||| ||||||||| ||||||||||||||| | ||||| ||||||||| ||||||||||||| ||||| ||||| | |||| |||| |
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| T |
3291074 |
ggttgattccacattatattcagaattttgcacaaagcaaagccgaacgctgggctttggttaccatctcatttgcctgagttgtgtgaggcggttggag |
3291173 |
T |
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| Q |
144 |
ttaaaattattggtaacaagcaaa |
167 |
Q |
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| T |
3291174 |
ttgaaattattggtgacaagcaaa |
3291197 |
T |
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