View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9219_low_17 (Length: 459)
Name: NF9219_low_17
Description: NF9219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9219_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 295
Target Start/End: Complemental strand, 26019526 - 26019244
Alignment:
| Q |
13 |
ataatactcgagttcatctaatagtatcatactaggtcgaaacagtaggctaattcaactcacggtttgatccatcattcatactgggaaaacttttagt |
112 |
Q |
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| T |
26019526 |
ataatactcgagttcatctaatagtatcatactaggtcgaaacagtaggctaattcaactcacggtttgatccatcatccatactgggaaaacttttagt |
26019427 |
T |
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| Q |
113 |
gcaagaaagagtgaaacatgacataaatgagcattagcaacaaacacagcggaataaatnnnnnnncataaacaacgtcttcaagacttagcttaagtgg |
212 |
Q |
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| T |
26019426 |
gcaagaaagagtgaaacatgacataaattagcattagcaacaaacacaacggaataaataaaaaaacataaacaacgtcttcaagacgtagcttaagtgg |
26019327 |
T |
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| Q |
213 |
ttgaactgagactaagaactaagagatccagggttcaaagttcagctagtaacacaacatactaacaattaacatttgcttac |
295 |
Q |
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| T |
26019326 |
ttgaactgagactaagaacgaagagatccagggttcaaagttcagctagtaacacaacatactaacaattaacatttgcttac |
26019244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 323 - 442
Target Start/End: Complemental strand, 26019217 - 26019098
Alignment:
| Q |
323 |
caagagtgaaaccatggattacattattagtttagtagcccttgcatatgcattcgtcccgatacacatgactagcaatggaagttgtccataagcttac |
422 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26019217 |
caagagcgaaaccatggattacattattagtttagtagcccttgcatatgcattcgtcccgatacacatgactagcaatggaagttgtccataagcttac |
26019118 |
T |
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| Q |
423 |
agttaacaggaagttccatg |
442 |
Q |
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| T |
26019117 |
agttaacaggaagttccatg |
26019098 |
T |
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