View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9219_low_18 (Length: 443)
Name: NF9219_low_18
Description: NF9219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9219_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 37 - 399
Target Start/End: Complemental strand, 35005881 - 35005519
Alignment:
| Q |
37 |
ggcctacccatgaaccaccgacagaaaggnnnnnnncaaagcacaagtacaaaccaagaagccaaaactaaaacggcacccctaggaacatccacaacaa |
136 |
Q |
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| T |
35005881 |
ggcctacccacgaaccaccgacagaaaggaaaaaaacaaagcacaagaacaaaccaagaagccaaaactaaaatggcacccctaggaacatccacaacaa |
35005782 |
T |
|
| Q |
137 |
aagcactccaaaagctccaccccgccagcactaccagaagcagcaaagccaagagaaaaccaccaagcagaaggaccgcagaaatctagggcccacccaa |
236 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35005781 |
aagcactccaaaacctcccccccgccagcactaccagaagcagcaaagccaagagaaaaccaccaagcagaaggaccgcagaaatctagggcccacccaa |
35005682 |
T |
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| Q |
237 |
acgcacaaagcacagatcaaatgcatctatgcccagcacacaaaaccctactcgcgccaacaaagaatcggctccaccttccactcataaagagaacagt |
336 |
Q |
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| T |
35005681 |
acgcacaaagcacagatcaaatccatctatgcccagcacacaaaaccctactcgtgccaacaaagaatcggctccaccttccactcataaagagaacagt |
35005582 |
T |
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| Q |
337 |
ggtattgagtgtgtttagcaaagaaccacttccgaacaggaattggaccctatcaaccaaatg |
399 |
Q |
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| T |
35005581 |
ggtattgagtgtgtttagcaaagaaccacttccgaacaggaattggaccctatcaaccaaatg |
35005519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 369
Target Start/End: Complemental strand, 8766190 - 8766105
Alignment:
| Q |
284 |
ctactcgcgccaacaaagaatcggctccaccttccactcataaagagaacagtggtattgagtgtgtttagcaaagaaccacttcc |
369 |
Q |
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| T |
8766190 |
ctactggcgccaacaaagaattgactccaccttccactcataaaatgaacactagtgtgaagggtgtttagcaatgaaccaattcc |
8766105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 327
Target Start/End: Complemental strand, 9500254 - 9500222
Alignment:
| Q |
295 |
aacaaagaatcggctccaccttccactcataaa |
327 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
9500254 |
aacaaagaattggctccaccttccactcataaa |
9500222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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