View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9219_low_19 (Length: 431)
Name: NF9219_low_19
Description: NF9219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9219_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 24 - 415
Target Start/End: Complemental strand, 45409082 - 45408699
Alignment:
| Q |
24 |
aatgtgtaggatgtttttatcgactgttaagagattgaagatcacaagagtagacacatttgggtgttaaaaatgtatatgacaacaaatgtgcttgatt |
123 |
Q |
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| T |
45409082 |
aatgtgtaggatgtttttatcgactgttaagagattgaagatcacaagggtagacacatttgggtgttaaaaatgtatatgacaacaaatgtgcttgatt |
45408983 |
T |
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| Q |
124 |
tcaaattttgttctgtagctagagtgagactcaatagagtgtgattgttatgtgatcatgtaatgtagaaaaatcaatcttactctagttaattaattag |
223 |
Q |
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| T |
45408982 |
tcaaattttgttctgtagctagagtgagactcaatagagtgtgattgttatgtgatcatgtaatgtagaaaaatc----ttactctagttaatta----g |
45408891 |
T |
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| Q |
224 |
tggagtatgcggaaaaacatagatgtaaatgcatagctctcactttgttttttaatttctaagaagcaaatggaaaagaatagtattgtacatgctctat |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45408890 |
tggagtatgcggaaaaacatagatgtaaatgcatagctctcactttgttttttaatttctaagaagcaaatggaaaagaatagtattgtacatgctctat |
45408791 |
T |
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| Q |
324 |
tcatcaagcccaccagtgacttcactttcgtttgaattactgtgttctaagattaagtttatttaaaaaatttctcaaaaaatcatttatgt |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
45408790 |
tcatcaagcccaccagtgacttcactttcgtttgaattactgtgttctaagattaagtttatttaaatattttctcaaaaaatcatttatgt |
45408699 |
T |
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