View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9219_low_2 (Length: 759)

Name: NF9219_low_2
Description: NF9219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9219_low_2
NF9219_low_2
[»] chr3 (16 HSPs)
chr3 (13-568)||(54681476-54682025)
chr3 (13-62)||(3976245-3976294)
chr3 (13-62)||(42165701-42165750)
chr3 (13-62)||(44230252-44230301)
chr3 (13-62)||(47073692-47073741)
chr3 (13-62)||(50963492-50963541)
chr3 (13-62)||(48889273-48889322)
chr3 (13-58)||(4007808-4007853)
chr3 (13-54)||(20917500-20917541)
chr3 (13-54)||(20926462-20926503)
chr3 (13-58)||(30255487-30255532)
chr3 (13-58)||(42756694-42756739)
chr3 (13-62)||(48563466-48563515)
chr3 (13-62)||(49195932-49195981)
chr3 (13-54)||(42805746-42805788)
chr3 (13-42)||(49268753-49268782)
[»] chr1 (17 HSPs)
chr1 (176-325)||(24212235-24212380)
chr1 (13-62)||(23275589-23275638)
chr1 (13-62)||(31783213-31783262)
chr1 (13-62)||(19527028-19527077)
chr1 (13-62)||(45825416-45825465)
chr1 (13-62)||(47502842-47502891)
chr1 (13-58)||(19524671-19524716)
chr1 (13-58)||(19524858-19524903)
chr1 (13-58)||(19525519-19525564)
chr1 (13-58)||(19526654-19526699)
chr1 (13-58)||(19526841-19526886)
chr1 (13-58)||(35258358-35258403)
chr1 (13-62)||(52802670-52802719)
chr1 (13-62)||(51321253-51321301)
chr1 (544-597)||(24212091-24212144)
chr1 (22-62)||(19925280-19925320)
chr1 (22-62)||(30890599-30890639)
[»] chr8 (13 HSPs)
chr8 (13-62)||(5303706-5303755)
chr8 (13-62)||(15036213-15036262)
chr8 (13-62)||(43212044-43212093)
chr8 (13-62)||(39252541-39252590)
chr8 (13-62)||(40076744-40076793)
chr8 (13-58)||(43188592-43188637)
chr8 (13-58)||(39938701-39938746)
chr8 (13-58)||(41249574-41249619)
chr8 (13-62)||(45064769-45064818)
chr8 (13-62)||(34822501-34822551)
chr8 (27-62)||(39846485-39846520)
chr8 (22-62)||(489124-489164)
chr8 (22-62)||(42485024-42485064)
[»] chr7 (13 HSPs)
chr7 (13-62)||(17835615-17835664)
chr7 (13-62)||(27453104-27453153)
chr7 (13-61)||(47776874-47776922)
chr7 (13-62)||(36978137-36978186)
chr7 (13-58)||(9494281-9494326)
chr7 (13-62)||(39461067-39461116)
chr7 (13-58)||(34738909-34738954)
chr7 (13-58)||(47672570-47672615)
chr7 (13-62)||(37340843-37340892)
chr7 (22-62)||(15073723-15073763)
chr7 (22-62)||(42507522-42507562)
chr7 (23-62)||(14689553-14689592)
chr7 (32-62)||(10517519-10517549)
[»] chr6 (3 HSPs)
chr6 (13-62)||(6320048-6320097)
chr6 (13-62)||(31769244-31769293)
chr6 (13-54)||(24088267-24088308)
[»] chr5 (11 HSPs)
chr5 (13-62)||(7757863-7757912)
chr5 (13-61)||(42941972-42942020)
chr5 (13-62)||(17658861-17658910)
chr5 (13-62)||(28877181-28877230)
chr5 (13-62)||(42537688-42537737)
chr5 (14-62)||(8579992-8580040)
chr5 (13-59)||(512257-512303)
chr5 (13-58)||(19228157-19228202)
chr5 (13-62)||(38968637-38968686)
chr5 (13-58)||(8701709-8701754)
chr5 (22-62)||(28241294-28241334)
[»] chr4 (12 HSPs)
chr4 (13-62)||(21022374-21022423)
chr4 (13-62)||(50902018-50902067)
chr4 (13-62)||(51683741-51683790)
chr4 (13-59)||(55407272-55407318)
chr4 (13-62)||(48256056-48256105)
chr4 (13-62)||(40357766-40357815)
chr4 (13-62)||(50275273-50275322)
chr4 (13-51)||(37021563-37021601)
chr4 (22-62)||(1089079-1089119)
chr4 (22-62)||(1308609-1308649)
chr4 (22-62)||(30726236-30726276)
chr4 (13-51)||(68070-68108)
[»] chr2 (9 HSPs)
chr2 (13-62)||(39948139-39948188)
chr2 (13-62)||(45429129-45429178)
chr2 (13-62)||(22686917-22686966)
chr2 (13-62)||(28469179-28469228)
chr2 (13-62)||(45136788-45136837)
chr2 (13-57)||(32955844-32955888)
chr2 (624-712)||(23888725-23888813)
chr2 (624-712)||(23892801-23892889)
chr2 (22-62)||(17421105-17421145)
[»] scaffold0634 (1 HSPs)
scaffold0634 (13-49)||(7899-7935)
[»] scaffold0180 (1 HSPs)
scaffold0180 (13-62)||(15107-15157)
[»] scaffold0155 (1 HSPs)
scaffold0155 (13-51)||(10833-10871)


Alignment Details
Target: chr3 (Bit Score: 525; Significance: 0; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 13 - 568
Target Start/End: Complemental strand, 54682025 - 54681476
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaacatgataattggttctcacctcacaatcaattgcggtgattataacactg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54682025 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaacatgataattggttctcacctcacaatcaattgcggtgattataacactg 54681926  T
Q  113 gttgggaaggaaccataaaaatattctaaaaggagacaactaatcccacacctgaaatagttgatcagaagactattttaaaaaagtaactttcgtaaaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54681925 gttgggaaggaaccataaaaatattctaaaaggagacaactaatcccacacctgaaatagttgatcagaagactattttaaaaaagtaactttcgtaaaa 54681826  T
Q  213 tttatatttaaatattaagagaaataatacaaaacctattattttaagccataatatatatgcacatttacatgtatcatactagaatcttagatgaaat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54681825 tttatatttaaatattaagagaaataatacaaaacctattattttaagccataatatatatgcacatttacatgtatcatactagaatcttagatgaaat 54681726  T
Q  313 ttcaaaacaaaaaagtccaatcaatcaccaaaaatgaaatttcatatttaaattgagaggaaattagagttcaaaatagaagttgagaataagttgtcca 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  54681725 ttcaaaacaaaaaagtccaatcaatcaccaaaaatgaaatttcatatttaaattgagaggaaattagagttcaaaatagaagttgagaataagctgtcca 54681626  T
Q  413 tcaatcaatgctataaaagtagtagagtcgatataacatggagtagatgttagttttagtgcaaagagctatattggtagttgtcatccatccttgctat 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||      | |||||||||||||||||||||||||||||||||||||||||||||    
T  54681625 tcaatcaatgctataaaagtagtagagtcgatataacatggagtaga------tattagtgcaaagagctatattggtagttgtcatccatccttgctat 54681532  T
Q  513 aaattgtgtttgtatctattactcaatactcaatataatactaatattcgtttaat 568  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54681531 aaattgtgtttgtatctattactcaatactcaatataatactaatattcgtttaat 54681476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 3976294 - 3976245
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3976294 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 3976245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 42165750 - 42165701
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42165750 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 42165701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 44230301 - 44230252
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44230301 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 44230252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 47073692 - 47073741
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47073692 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 47073741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 50963541 - 50963492
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50963541 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 50963492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 48889322 - 48889273
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48889322 ataattctcataacctaaactaactaaaaaatcaatatacacttaaccaa 48889273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 4007808 - 4007853
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaa 58  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  4007808 ataattcttgtaacctaaactaactaaaaaatcaatatacacttaa 4007853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 20917500 - 20917541
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacac 54  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  20917500 ataattctcgtaacctaaactaactaaaaaatcaatatacac 20917541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 20926462 - 20926503
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacac 54  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  20926462 ataattctcgtaacctaaactaactaaaaaatcaatatacac 20926503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 30255487 - 30255532
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaa 58  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  30255487 ataattctcataacctaaactaactaaaaaatcaatatacacttaa 30255532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 42756739 - 42756694
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaa 58  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  42756739 ataattctcataacctaaactaactaaaaaatcaatatacacttaa 42756694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 48563515 - 48563466
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  48563515 ataattcttgtaatctaaactaactaaaaaatcaatatacacttaaccaa 48563466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 49195932 - 49195981
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    |||||||| |||| ||||||||||||||||||||||||||| ||||||||    
T  49195932 ataattcttgtaagctaaactaactaaaaaatcaatatacaattaaccaa 49195981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 42805746 - 42805788
Alignment:
Q  13 ataattctcgtaacctaaactaact-aaaaaatcaatatacac 54  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  42805746 ataattctcataacctaaactaactaaaaaaatcaatatacac 42805788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 49268753 - 49268782
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaa 42  Q
    ||||||||||||||||||||||||||||||    
T  49268753 ataattctcgtaacctaaactaactaaaaa 49268782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 4e-28; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 176 - 325
Target Start/End: Complemental strand, 24212380 - 24212235
Alignment:
Q  176 atcagaagactattttaaaaaagtaactttcgtaaaatttatatttaaatattaagagaaa--taatacaaaacctattattttaagccataatatatat 273  Q
    |||||||||||| ||||| || | ||||||||| |||| || ||| |||||||||||||||  ||||||||||||||| |||||||||||||||||||||    
T  24212380 atcagaagactactttaataa-gaaactttcgtgaaatataaattaaaatattaagagaaaaataatacaaaacctatgattttaagccataatatatat 24212282  T
Q  274 gcacatttacatgtatcatactagaatcttagatgaaatttcaaaacaaaaa 325  Q
     ||||     ||| |||||||||||||||||||||||||||  |||||||||    
T  24212281 acaca-----atgcatcatactagaatcttagatgaaatttggaaacaaaaa 24212235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 23275589 - 23275638
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23275589 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 23275638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 31783213 - 31783262
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31783213 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 31783262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 19527028 - 19527077
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  19527028 ataattctcgtaacctacactaactaaaaaatcaatatacacttaaccaa 19527077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 45825465 - 45825416
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  45825465 ataattctcgtaacttaaactaactaaaaaatcaatatacacttaaccaa 45825416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 47502891 - 47502842
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  47502891 ataattcttgtaacctaaactaactaaaaaatcaatatacacttaaccaa 47502842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 19524671 - 19524716
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaa 58  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  19524671 ataattctcgtaacctacactaactaaaaaatcaatatacacttaa 19524716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 19524858 - 19524903
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaa 58  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  19524858 ataattctcgtaacctacactaactaaaaaatcaatatacacttaa 19524903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 19525519 - 19525564
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaa 58  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  19525519 ataattctcgtaacctacactaactaaaaaatcaatatacacttaa 19525564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 19526654 - 19526699
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaa 58  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  19526654 ataattctcgtaacctacactaactaaaaaatcaatatacacttaa 19526699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 19526841 - 19526886
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaa 58  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  19526841 ataattctcgtaacctacactaactaaaaaatcaatatacacttaa 19526886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 35258358 - 35258403
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaa 58  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  35258358 ataattctcataacctaaactaactaaaaaatcaatatacacttaa 35258403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 52802719 - 52802670
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  52802719 ataattctcttaacctaaactaacaaaaaaatcaatatacacttaaccaa 52802670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 51321301 - 51321253
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  51321301 ataattctcataacctaaactaacta-aaaatcaatatacacttaaccaa 51321253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 544 - 597
Target Start/End: Complemental strand, 24212144 - 24212091
Alignment:
Q  544 aatataatactaatattcgtttaatgttaaatattaatagaataccatgtcaat 597  Q
    |||||||||||||||||| ||| | ||||||||||||||||||| ||| |||||    
T  24212144 aatataatactaatattcttttgaagttaaatattaatagaatatcatttcaat 24212091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 19925320 - 19925280
Alignment:
Q  22 gtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    |||||||||||||||||||||||||| ||| ||||||||||    
T  19925320 gtaacctaaactaactaaaaaatcaaaataaacttaaccaa 19925280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 30890639 - 30890599
Alignment:
Q  22 gtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    |||||||||||||||||||||||||| ||| ||||||||||    
T  30890639 gtaacctaaactaactaaaaaatcaaaataaacttaaccaa 30890599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 5303706 - 5303755
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5303706 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 5303755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 15036213 - 15036262
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15036213 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 15036262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 43212093 - 43212044
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43212093 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 43212044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 39252590 - 39252541
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39252590 ataattctcgtaacctaaactaactaaaaaatcaatatacacttgaccaa 39252541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 40076744 - 40076793
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40076744 ataattctcataacctaaactaactaaaaaatcaatatacacttaaccaa 40076793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 43188637 - 43188592
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaa 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  43188637 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaa 43188592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 39938701 - 39938746
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaa 58  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  39938701 ataattctcgtaacctacactaactaaaaaatcaatatacacttaa 39938746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 41249574 - 41249619
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaa 58  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  41249574 ataattctcgtaacctacactaactaaaaaatcaatatacacttaa 41249619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 45064818 - 45064769
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  45064818 ataattctcctaacctaaactaactaaaaaatcaaaatacacttaaccaa 45064769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 34822501 - 34822551
Alignment:
Q  13 ataattctcgtaacctaaactaact-aaaaaatcaatatacacttaaccaa 62  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  34822501 ataattctcataacctaaactaactaaaaaaatcaatatacacttaaccaa 34822551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 62
Target Start/End: Original strand, 39846485 - 39846520
Alignment:
Q  27 ctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||||||||||||||||||||||||||||||    
T  39846485 ctaaactaactaaaaaatcaatatacacttaaccaa 39846520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 489124 - 489164
Alignment:
Q  22 gtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    |||||||||||||||||||||||||| ||| ||||||||||    
T  489124 gtaacctaaactaactaaaaaatcaaaataaacttaaccaa 489164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 42485024 - 42485064
Alignment:
Q  22 gtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    |||||||||||||||||||||||||| ||| ||||||||||    
T  42485024 gtaacctaaactaactaaaaaatcaaaataaacttaaccaa 42485064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 17835664 - 17835615
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17835664 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 17835615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 27453104 - 27453153
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27453104 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 27453153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 47776922 - 47776874
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaacca 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47776922 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaacca 47776874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 36978186 - 36978137
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36978186 ataattctcataacctaaactaactaaaaaatcaatatacacttaaccaa 36978137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 9494281 - 9494326
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaa 58  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  9494281 ataattctcataacctaaactaactaaaaaatcaatatacacttaa 9494326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 39461116 - 39461067
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  39461116 ataattcttgtaacctaaactaactaaaacatcaatatacacttaaccaa 39461067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 34738954 - 34738909
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaa 58  Q
    |||||||||||||| || ||||||||||||||||||||||||||||    
T  34738954 ataattctcgtaacttacactaactaaaaaatcaatatacacttaa 34738909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 47672570 - 47672615
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaa 58  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||    
T  47672570 ataattctcataacctaaactaactagaaaatcaatatacacttaa 47672615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 37340892 - 37340843
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||| ||||||||||||||||| |||| ||||||| |||||||||    
T  37340892 ataattctcataacctaaactaactaacaaattaatatactcttaaccaa 37340843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 15073723 - 15073763
Alignment:
Q  22 gtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    |||||||||||||||||||||||||| ||| ||||||||||    
T  15073723 gtaacctaaactaactaaaaaatcaaaataaacttaaccaa 15073763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 42507522 - 42507562
Alignment:
Q  22 gtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    |||||||||||||||||||||||||| ||| ||||||||||    
T  42507522 gtaacctaaactaactaaaaaatcaaaataaacttaaccaa 42507562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 14689553 - 14689592
Alignment:
Q  23 taacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  14689553 taacataaactaactaaataatcaatatacacttaaccaa 14689592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 62
Target Start/End: Complemental strand, 10517549 - 10517519
Alignment:
Q  32 ctaactaaaaaatcaatatacacttaaccaa 62  Q
    |||||||||||||||||||||||||||||||    
T  10517549 ctaactaaaaaatcaatatacacttaaccaa 10517519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 6320048 - 6320097
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6320048 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 6320097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 31769293 - 31769244
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31769293 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 31769244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 24088267 - 24088308
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacac 54  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  24088267 ataattctcataacctaaactaactaaaaaatcaatatacac 24088308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 7757912 - 7757863
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7757912 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 7757863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 42941972 - 42942020
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaacca 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42941972 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaacca 42942020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 17658910 - 17658861
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17658910 ataattctcataacctaaactaactaaaaaatcaatatacacttaaccaa 17658861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 28877230 - 28877181
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28877230 ataattctcgtaacctaaactaactaaaaaatcaaaatacacttaaccaa 28877181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 42537737 - 42537688
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42537737 ataattctcgtaaccttaactaactaaaaaatcaatatacacttaaccaa 42537688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 8579992 - 8580040
Alignment:
Q  14 taattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8579992 taattctcgtaacctaaactaactaaaaaatcaaaatacacttaaccaa 8580040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 512257 - 512303
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaac 59  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  512257 ataattctcataacctaaactaactaaaaaatcaatatacacttaac 512303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 19228157 - 19228202
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaa 58  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  19228157 ataattctcataacctaaactaactaaaaaatcaatatacacttaa 19228202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 38968686 - 38968637
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||| |||||||||||||||| |||||| ||||||||||||||||||    
T  38968686 ataattcccgtaacctaaactaaccaaaaaaacaatatacacttaaccaa 38968637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 8701709 - 8701754
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaa 58  Q
    |||||| || |||||||||||||||||| |||||||||||||||||    
T  8701709 ataattttcataacctaaactaactaaacaatcaatatacacttaa 8701754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 28241294 - 28241334
Alignment:
Q  22 gtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    |||||||||||||||||||||||||| ||| ||||||||||    
T  28241294 gtaacctaaactaactaaaaaatcaaaataaacttaaccaa 28241334  T

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Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 21022374 - 21022423
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21022374 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 21022423  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 50902067 - 50902018
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50902067 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 50902018  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 51683790 - 51683741
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51683790 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 51683741  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 55407272 - 55407318
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaac 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  55407272 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaac 55407318  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 48256056 - 48256105
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48256056 ataattctcataacctaaactaactaaaaaatcaatatacacttaaccaa 48256105  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 40357766 - 40357815
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  40357766 ataattctcgtaacttaaactaactaaaaaatcaaaatacacttaaccaa 40357815  T

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Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 50275322 - 50275273
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  50275322 ataattctcgtaacctacactaactaaaaaatcaatatacatttaaccaa 50275273  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 37021563 - 37021601
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatata 51  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  37021563 ataattctcgtaacctaaactaactaaaaaattaatata 37021601  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 1089079 - 1089119
Alignment:
Q  22 gtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    |||||||||||||||||||||||||| ||| ||||||||||    
T  1089079 gtaacctaaactaactaaaaaatcaaaataaacttaaccaa 1089119  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 1308609 - 1308649
Alignment:
Q  22 gtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    |||||||||||||||||||||||||| ||| ||||||||||    
T  1308609 gtaacctaaactaactaaaaaatcaaaataaacttaaccaa 1308649  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 30726236 - 30726276
Alignment:
Q  22 gtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    |||||||||||||||||||||||||| ||| ||||||||||    
T  30726236 gtaacctaaactaactaaaaaatcaaaataaacttaaccaa 30726276  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 68108 - 68070
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatata 51  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  68108 ataattctcataacctaaactaactaaataatcaatata 68070  T

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Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 39948188 - 39948139
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39948188 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 39948139  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 45429178 - 45429129
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45429178 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 45429129  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 22686966 - 22686917
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22686966 ataattctcgtaacctaaactaactaaaaaatcaaaatacacttaaccaa 22686917  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 28469228 - 28469179
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28469228 ataattctcgtaacctaaactaactaaaaaatcaaaatacacttaaccaa 28469179  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 45136788 - 45136837
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  45136788 ataattctcgtaacctaaactaactaaaaaatcaatatacatttaaccaa 45136837  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 32955844 - 32955888
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatatacactta 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  32955844 ataattctcgtaacctaaactaactaaaaaatcaatatacactta 32955888  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 624 - 712
Target Start/End: Original strand, 23888725 - 23888813
Alignment:
Q  624 tttggaaggaatgatacaaaatatgataagggatggaattaaaatcattagggaactaactcatattctttgtaaaaactaggatagtt 712  Q
    |||||||||||||||||||||| ||  ||||||||||||||||||||| |||||    ||| ||||||| |||||||||| | ||||||    
T  23888725 tttggaaggaatgatacaaaatgtgtgaagggatggaattaaaatcatcagggatagtacttatattctgtgtaaaaactggcatagtt 23888813  T

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Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 624 - 712
Target Start/End: Original strand, 23892801 - 23892889
Alignment:
Q  624 tttggaaggaatgatacaaaatatgataagggatggaattaaaatcattagggaactaactcatattctttgtaaaaactaggatagtt 712  Q
    |||||||||||||||||||||| ||  ||||||||||||||||||||| |||||    ||| ||||||| |||||||||| | ||||||    
T  23892801 tttggaaggaatgatacaaaatgtgtgaagggatggaattaaaatcatcagggatagtacttatattctgtgtaaaaactggcatagtt 23892889  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 17421145 - 17421105
Alignment:
Q  22 gtaacctaaactaactaaaaaatcaatatacacttaaccaa 62  Q
    |||||||||||||||||||||||||| ||| ||||||||||    
T  17421145 gtaacctaaactaactaaaaaatcaaaataaacttaaccaa 17421105  T

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Target: scaffold0634 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 7935 - 7899
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaata 49  Q
    |||||||||||||||||||||||||||||||||||||    
T  7935 ataattctcgtaacctaaactaactaaaaaatcaata 7899  T

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Target: scaffold0180 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 15107 - 15157
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaa-aatcaatatacacttaaccaa 62  Q
    |||||||| ||||||||||||||| |||| |||||||||||||||||||||    
T  15107 ataattcttgtaacctaaactaaccaaaaaaatcaatatacacttaaccaa 15157  T

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Target: scaffold0155 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 10871 - 10833
Alignment:
Q  13 ataattctcgtaacctaaactaactaaaaaatcaatata 51  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  10871 ataattctcataacctaaactaactaaataatcaatata 10833  T

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