View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9219_low_20 (Length: 415)
Name: NF9219_low_20
Description: NF9219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9219_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 46 - 399
Target Start/End: Original strand, 35132747 - 35133100
Alignment:
| Q |
46 |
catacatcttgttttagcagcaataaaaaagacccaaaaacaaagatgaatgaaaatgcaggaagagtacaatgaaactaacagagggatgattgaagaa |
145 |
Q |
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| T |
35132747 |
catacatcttgttttagcagcagtaaaaaagacccaaaaacaaagatgaatgaaaatgcaggaacagtacaatgaaactaacagagggatgattgaagaa |
35132846 |
T |
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| Q |
146 |
agcacaaggacttacagtaagaatatttggatgacgcaacctcagaagcaaagcaacttcagaagtaaattgcttctcaagaaaagaagccaaatcttca |
245 |
Q |
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| T |
35132847 |
agcacaaggacttacagtaagaatatttggatgacgcaacctcagaagcaaagcaacttcagaagtaaattgcttctcaagaaaagaagccaaatcttca |
35132946 |
T |
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| Q |
246 |
tcttcttcaggctgactcacaagcttaattgcaacatccttttgcttgtaaacacctctatagattctactgtgtctaccagaagcaaatttagatccaa |
345 |
Q |
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| T |
35132947 |
tcttcttcaggctgactcacaagcttaattgcaacatccttttgcttgtaaacacctctatagattctactgtgtctaccagaagcaaatttagatccaa |
35133046 |
T |
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| Q |
346 |
tgagcaactgagacatatctgcactccattcttcttcaccttctcctttgattg |
399 |
Q |
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| T |
35133047 |
tgagcaactgagacatatctgcactccattcttcttcaccttctcctttgattg |
35133100 |
T |
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Back To:
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Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 192 - 373
Target Start/End: Original strand, 43933314 - 43933495
Alignment:
| Q |
192 |
agcaaagcaacttcagaagtaaattgcttctcaagaaaagaagccaaatcttcatcttcttcaggctgactcacaagcttaattgcaacatccttttgct |
291 |
Q |
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||||||||||| ||||||||||| || |||||||| |||| |||||| || ||||| ||||| || ||||| ||||||||||| ||||||||| | | || |
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| T |
43933314 |
agcaaagcaacctcagaagtaaagtgtttctcaagcaaagcagccaattcctcatcctcttctggttgactaacaagcttaatagcaacatccatgttct |
43933413 |
T |
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| Q |
292 |
tgtaaacacctctatagattctactgtgtctaccagaagcaaatttagatccaatgagcaactgagacatatctgcactcca |
373 |
Q |
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| || | |||||| ||||| || || ||||| |||||| ||||||| | ||||||| |||||||||||||| ||| |||| |
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| T |
43933414 |
tatagatacctctgtagatcctgctatgtctcccagaatcaaatttggcaccaatgaataactgagacatatcagcattcca |
43933495 |
T |
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