View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9219_low_26 (Length: 360)
Name: NF9219_low_26
Description: NF9219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9219_low_26 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: scaffold0020 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 10 - 352
Target Start/End: Complemental strand, 159091 - 158749
Alignment:
| Q |
10 |
agaacctgtgaaatagtcacacaacagaaatgatgagggaattgtttttggttaggaaacaaatgctgagatagggttagaagtgtcaaaaatatcattt |
109 |
Q |
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| T |
159091 |
agaacctgtgaaatagtcacacaacagaaacgatgagggagttgtttttggttaggaaacaaatgctgagatagggttagaagtgtcaaaaatatcattt |
158992 |
T |
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| Q |
110 |
aggatatgcgatctggtcagattatgttgcagaaatatgatcgggaatgtctagacttccggaaaagcgtagaattgtgtaatcctattatatgattctc |
209 |
Q |
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| T |
158991 |
aggatatgcgatctggtcagattgtgttccagaaatatgatcgggaatgtctagacttccggaaaagcgtagaattatgtaatcctattatatgattctc |
158892 |
T |
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| Q |
210 |
gaagcacaattattttcctaatatatgattcttgatgttgtctgatcctaaatgcaaatggaaataagattgatgtggattactgcagggaatgtggatt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
158891 |
gaagcacaattattttcctaatatatgattcttgatgttgtcggatcctaaatgcaaatggaaataagattgatgtggattactgcagggaatatggatt |
158792 |
T |
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| Q |
310 |
gcattctcctacgacctcatccaatgagatcgacttctgtgct |
352 |
Q |
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| T |
158791 |
gcattctcctacgacctcatccaatgagatcgacttctgtgct |
158749 |
T |
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